Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g3106 ATGGAAAACCAAAAGATGAATGCTTCTTCAATTTCTGCACCATCATCACCGGAGCTAGGTCTTTCAATCACTCCAACTCGCATGGAGAGGGCAATGAGAGTCGATTTTGAAGACTTGGAGAAAAAGCAACGGATCTTCATCGAAGAACTCAGCCTTCGTGCGTGGATTCGAACTAAAGAGAAGAACAAGAACACTATTGAGAGAAATGATTTTGCTgaagaaaataatgaaaacaAAGTCTATGACTTCTTAGCTGATCTTGTTCCACTGGATCCGAATGACCATCCCTCTTCCAATGTCAAGGAAGAACATTGTGGAATAATAACTGCTGAAGAAGTTACGAATTCTGATGTGGAGGCCCCTGTGATGAATGTGGGCAATATGATCAGTGCGGAAGCTCCAATATTACTATCAAAAGCATGTGAGATGTTCATTCAAGAAATGAGCCTTCGTGCTTGGATGCAAATTGAAGAGAACAAGAGACGTGTTATTCAACGTCATGACGTTGTTGAATCCATTCATGAAAATAAACTCTACGACTTCTTAACTAATGTTATTCCATTGCAATACCAAGGTGGCCATCCATCTCTCGTGCCTCCACCTCAACCTTACTTCagTGATCTGATCAGGGGTTTGAATCAAGTGAAGTCAAATGTGATCTTTGGGAACAAGCTTAGCCTTTTATGA 687 0.4003 MENQKMNASSISAPSSPELGLSITPTRMERAMRVDFEDLEKKQRIFIEELSLRAWIRTKEKNKNTIERNDFAEENNENKVYDFLADLVPLDPNDHPSSNVKEEHCGIITAEEVTNSDVEAPVMNVGNMISAEAPILLSKACEMFIQEMSLRAWMQIEENKRRVIQRHDVVESIHENKLYDFLTNVIPLQYQGGHPSLVPPPQPYFSDLIRGLNQVKSNVIFGNKLSLL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g3106 228 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 45 106 - -
Sto8g3106 228 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 128 188 - -
Sto8g3106 228 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 45 106 IPR027170 GO:0003700|GO:0006355|GO:0016602
Sto8g3106 228 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 128 188 IPR027170 GO:0003700|GO:0006355|GO:0016602
Sto8g3106 228 Gene3D Histone, subunit A 39 89 IPR009072 GO:0046982
Sto8g3106 228 Gene3D Histone, subunit A 106 187 IPR009072 GO:0046982
Sto8g3106 228 SUPERFAMILY Histone-fold 44 89 IPR009072 GO:0046982
Sto8g3106 228 MobiDBLite consensus disorder prediction 1 22 - -
Sto8g3106 228 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 127 169 IPR003958 -
Sto8g3106 228 SUPERFAMILY Histone-fold 127 187 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g3106 Sto-Chr8 24612310 24620485 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g3106 128 214 CCAAT-HAP5 Transcription Factor Family AT1G56170 43.750 3.59e-21 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto8g3106 CBFD_NFYB_HMF 1.5e-07 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g3106 K08066 - dcr:108215680 85.5001