Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g3102 ATGTCAATTCCACCTTATATGCTTGCTCAGTATCGTCAAGAAGAGCAAAAGAACCAGGCATTACAAATGTTTTGGCAACAACAATTGTATGAGATACAGAATGCTGAagCAATTAGGGGCCAAAATCAATTGCCTTTGGCTCGAATCAAGAGAATCATGAAGTTTGATTTTGATGTAAAGATGATCAGTGCGGAAACTCCAATATTACTATCAAAAGCATGTGAGATTTTCATTCAAGAAATGAGCCTTCGTGCTTGGATGCAAATTGAAGAGAACAAGAGACGTGTTATTCAACGTCATGACGTTGTTGAATCCAGTCTTGAAAATAAACTCTACGACTTCTTAACTGATGTTATTCCATTGCAATACCAAGTTGGCCATCCATCTCTCGAAGAACATTCTGGACAAGCTGCAGAAAATCCTAATTATGCTGCTCCAATTGTTGATGAGAGTTTGATGAATATGGGGATTAATGTGACTgacCAGCAAGCTGAAAGTAGCCAGCAGTATACTGAAGCCTTCACCATGGATCCATCCATTGTGCCGTCTCATCCTCAGTTTCCCTACAATTTCCCTCCCCCAAATTAA 588 0.3912 MSIPPYMLAQYRQEEQKNQALQMFWQQQLYEIQNAEAIRGQNQLPLARIKRIMKFDFDVKMISAETPILLSKACEIFIQEMSLRAWMQIEENKRRVIQRHDVVESSLENKLYDFLTDVIPLQYQVGHPSLEEHSGQAAENPNYAAPIVDESLMNMGINVTDQQAESSQQYTEAFTMDPSIVPSHPQFPYNFPPPN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g3102 195 Gene3D Histone, subunit A 5 120 IPR009072 GO:0046982
Sto8g3102 195 SUPERFAMILY Histone-fold 17 104 IPR009072 GO:0046982
Sto8g3102 195 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 102 IPR003958 -
Sto8g3102 195 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 12 167 - -
Sto8g3102 195 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 12 167 IPR027170 GO:0003700|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g3102 Sto-Chr8 24554915 24558526 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g3102 21 120 CCAAT-HAP5 Transcription Factor Family AT1G56170 52.000 5.11e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto8g3102 CBFD_NFYB_HMF 2.4e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g3102 K08066 - mnt:21409721 146.362