Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g3100 atggCCACCATAACCCATGGAAACCGGTCGAATGACAGTCCACTGTCGCGTCGTCGTTCCGTCCACCGTCGCATCGTCGAGAAGAGTCCATCGAAGAAGCACAAAGATCCATCCACCAAGATGATCAGTGCGGAAACTCCAATATTACTATCAACAGCATGTGAGATGTTCATTCAAGAAATGAGCCTTCGTGCTTGGATGCAAATTGAAGAGAACAAGAGACGTGTTATTCAACGTCATGACGTTGTTGAATCCATTCATGAAAATAAACTCTACGACTTCTTAACTGATGTTATTCCATTGCAATACCAAGGTGGCCATCCATCTCTCgAAGAACATTCTGGACAAGCTGCAGAAAATCCTAATTATGCTGCTCCAATTGTTGATGAGAGTTTGATGAATATGGGGATTAATGTGACTgacCAGCAAGCTGAAAGTAGCCAGCAGTATACTGAAGCCTTCACCATGGATCCATCCATTGTGCCGTCTCATCCTCAGTTTCCCTACAATTTCCCTCCCCCAAATTAA 528 0.4337 MATITHGNRSNDSPLSRRRSVHRRIVEKSPSKKHKDPSTKMISAETPILLSTACEMFIQEMSLRAWMQIEENKRRVIQRHDVVESIHENKLYDFLTDVIPLQYQGGHPSLEEHSGQAAENPNYAAPIVDESLMNMGINVTDQQAESSQQYTEAFTMDPSIVPSHPQFPYNFPPPN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g3100 175 Gene3D Histone, subunit A 5 100 IPR009072 GO:0046982
Sto8g3100 175 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 35 147 IPR027170 GO:0003700|GO:0006355|GO:0016602
Sto8g3100 175 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 35 147 - -
Sto8g3100 175 Pfam Core histone H2A/H2B/H3/H4 21 83 IPR007125 GO:0003677
Sto8g3100 175 MobiDBLite consensus disorder prediction 1 42 - -
Sto8g3100 175 SUPERFAMILY Histone-fold 36 100 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g3100 Sto-Chr8 24525477 24527009 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g3100 36 100 CCAAT-HAP5 Transcription Factor Family AT1G56170 50.769 2.27e-21 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto8g3100 CBFD_NFYB_HMF 8.8e-07 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g3100 K08066 - mnt:21409721 100.138