Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g3098 atggaaaatgaaGGCAACACTTCTTATCAGCATGCAAGCCAAAACGTTTTGGGGGATTTTGGAAGCAATGAGAACTTCAACCAGCAGCCATTAACAGATTTCAGCAACACCATCAATCAACCTGCTTCCCAACAGGTTCCGGAATTCATGTCAATTCCACCTTATATGCTTGCTCAGTATCGTCAAGAAGAGCAAAAGATGATCAGTGCGGAAACTCCAATTTTACTATCAAAAGCATGTGAGATATTCATTCAAGAAATGAGCCTTCGTGCTTGGATGCGAACTGAAAAGAACAAGAGACGTACTATTCAACGTTATGACGTTGCTGAATCCATTCATGAAAATAAACTCTATGACTTCTTAACTGATGTTATTCCATTGCAATACCATGGTGGCCATCCATCTCTCGTGCCTCCACCTCAACCTCAACTTCagGAAGAGCATTATGGACAAGCTGTAGAAAACCCTAATATGCTACTCTAA 483 0.3996 MENEGNTSYQHASQNVLGDFGSNENFNQQPLTDFSNTINQPASQQVPEFMSIPPYMLAQYRQEEQKMISAETPILLSKACEIFIQEMSLRAWMRTEKNKRRTIQRYDVAESIHENKLYDFLTDVIPLQYHGGHPSLVPPPQPQLQEEHYGQAVENPNMLL 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g3098 160 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 63 129 - -
Sto8g3098 160 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 63 129 IPR027170 GO:0003700|GO:0006355|GO:0016602
Sto8g3098 160 SUPERFAMILY Histone-fold 63 126 IPR009072 GO:0046982
Sto8g3098 160 Pfam Core histone H2A/H2B/H3/H4 61 110 IPR007125 GO:0003677
Sto8g3098 160 Gene3D Histone, subunit A 22 126 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g3098 Sto-Chr8 24471499 24501200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g3098 63 126 CCAAT-HAP5 Transcription Factor Family AT1G56170 54.688 3.45e-23 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto8g3098 Histone 1.9e-08 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g3098 K08066 - sce:YOR358W 90.5077