Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2966 atggaagagaaagagagtTATGCTTCGGGGATCGCCGTGAAGGCGAACGAAGCCCCGGAGAGCCACCGCGTAGCTCCGAGAAGTGAAAACTGCGGGCAGTTTGGCGGTCCCGCAGAAGTAGtaaagaagaaaagagggaGACCTAGGAAGTACGGACCTGACGGCAAAGTAGCGTTGCCGTTGTCGCCGATGCCGATTTCATCGTCAATTCCGTTGACCGGTGATTTCTCAGCGTGGAAACGGGGTAGAGGACGGCCGCTTGAATCGCTTAAGAAGTTATTTAAGAATGAATTTGAAAGTGTAGGAGGACCAGGTGATGGAATTGCATACTCAGTTGGTGCAAATTTTACGCCACACGTGCTTACTGTTAATGCTGGCGAGGTATTCTGTTCTATTTTCCTTTCTGTAACTGAGAAGGAATCCCCTGTCTATACATGCTGTAGTGAAGTAGTATTGGTTGCTGATTTCTACTCTTTTCATGATGTTACTATGAAGGTCATGTCCTTCTCTCAACAAGGATCTCGTGCTATTTGTATTCTTTCTGCAAATGGAACAATTTCAAATGTTACTCTTCGTCAACCAACTACTTCTGGAGGTACTTTAACATACGAGGGACGGTTTGAGATTCTTTCCCTGTCTGGTTCATATATGCCAACTGAGAATGGACTAACTAGGAGCAGATCTGGTGGTATGAGTGTCTCTTTGGCAGGCCCGGATGGTCGAGTTGTGGGAGGCGGCCTTGCTGGTCTGTTAGTGGCAGCAGGCCCTGTGCAGGTTGTTGTGGGCAGTTTTCTTCCGGGCCACCAGCAGGAGcacaaacaaaagaaacaaaagatgGATCATTATTCAACCATTACCCATGCTCATGTTAATCCCGTCTCAGTTGAAGAAATAAAAGTCAGCTTCGGAGGAGTAAAGCCGATCGTGACGCCTGCCGCTTTTCAAGTCGACAACAATATTGCCTCTTTTAACAATACCCATAGCTCTGGAAGCTCATCagctgatgaagaagaagatgatataACACCTTTGCCTGAAAAGGAGTCTAATCCCAACCAAACAAATGCTGGAGTTGTATTCTAA 1083 0.4367 MEEKESYASGIAVKANEAPESHRVAPRSENCGQFGGPAEVVKKKRGRPRKYGPDGKVALPLSPMPISSSIPLTGDFSAWKRGRGRPLESLKKLFKNEFESVGGPGDGIAYSVGANFTPHVLTVNAGEVFCSIFLSVTEKESPVYTCCSEVVLVADFYSFHDVTMKVMSFSQQGSRAICILSANGTISNVTLRQPTTSGGTLTYEGRFEILSLSGSYMPTENGLTRSRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEHKQKKQKMDHYSTITHAHVNPVSVEEIKVSFGGVKPIVTPAAFQVDNNIASFNNTHSSGSSSADEEEDDITPLPEKESNPNQTNAGVVF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2966 360 Gene3D - 152 289 - -
Sto8g2966 360 MobiDBLite consensus disorder prediction 346 360 - -
Sto8g2966 360 ProSiteProfiles PPC domain profile profile. 144 288 IPR005175 -
Sto8g2966 360 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 275 - -
Sto8g2966 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 160 338 - -
Sto8g2966 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 7 128 - -
Sto8g2966 360 CDD DUF296 161 264 IPR005175 -
Sto8g2966 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 160 338 IPR039605 GO:0003680
Sto8g2966 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 128 IPR039605 GO:0003680
Sto8g2966 360 MobiDBLite consensus disorder prediction 1 38 - -
Sto8g2966 360 MobiDBLite consensus disorder prediction 325 360 - -
Sto8g2966 360 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 264 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2966 Sto-Chr8 21921411 21927229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2966 38 345 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 50.158 1.10e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2966 - - gmx:100776862 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2595 10 36233589 36237608 Sto8g2966 8 21921411 21927229 CCT
Sto10g2595 10 36233589 36237608 Sto8g2966 8 21921411 21927229 ECH
Sto8g2966 8 21921411 21927229 Sto8g2966 8 21921411 21927229 ECH