Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2953 ATGTGGCTGAGTACTAAACTcaatttctctccttcttcGTTCTTAATCTTGAGTTTGCCTTCCGTCGCCGTCGAAACCCCAAGGGGGCTCCGCCGTCGCCGTCGAACAAGTGCCCTTGCCGCCGTTTCCGTCGAAGATAAGTGGGTGATTGGCCCCGACGAGAACAGCATAAAGAAGGTGATTGAGTACAAATTCAACGAAGATGGCAATATGGTTTACATCACTACCACCACTCGTATGTGCACGCTTGCTAACACTTGCCTTAGTAAGCAGGCCATTGAGAGGCGATCCTGGGCTAAGTTTGGTGATGCTGTTCACGAGGATGTTGGTAGCAGGCTCACCGTGGTGTCCACTGAAGAGATCCGCCTTGAGGCTCcagGTAGCAAAGCAGAAGAACCAAAGGTTGCTGGAGACCCATTGGCTCAGTTTCAAAAAGGTGCTGTTCTCATGGTCTGTCGGACTTGTGGGAAAAAGGGTGACCATTGGACATCAAGGTGTCCATACAAGGATCTTGCCCAGCCAGGGGACGCGTTTATTGATAAGCCGGCTGCTTCTGGTCCGGCTAAGGCGGCATATGTCCCCCCTGGTATGAGAGCAGGTGCAGAAAGGACCGGGTCAGATATGCGGCGAAGGAATGATGAGAATTCTGTGAGGGTCACCAACCTCTCAGAGGACACAAGAGAGGCTGATTTGGTTGAGCTGTTCCGTCCTTTTGGTGCTGTAAGCAGAGTGTATGTTGCTGTTGATAAGAAGAGTGGTATGAGCAGAGGATTTGGTTTTGTTGACTTTGTTAGTAAGGAAGATGGTCAGAGAGCTATTAACAAACTCAATGGTTATGGTTATGACAATCTCATCCTTAGAGTTGAATGGGCCACCCCAAGGGCAAACTGA 891 0.4882 MWLSTKLNFSPSSFLILSLPSVAVETPRGLRRRRRTSALAAVSVEDKWVIGPDENSIKKVIEYKFNEDGNMVYITTTTRMCTLANTCLSKQAIERRSWAKFGDAVHEDVGSRLTVVSTEEIRLEAPGSKAEEPKVAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAQPGDAFIDKPAASGPAKAAYVPPGMRAGAERTGSDMRRRNDENSVRVTNLSEDTREADLVELFRPFGAVSRVYVAVDKKSGMSRGFGFVDFVSKEDGQRAINKLNGYGYDNLILRVEWATPRAN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2953 296 PIRSF Transl_init_eIF-3_RNA-bind 34 296 IPR017334 GO:0003743|GO:0005737|GO:0005852
Sto8g2953 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 283 IPR000504 GO:0003723
Sto8g2953 296 CDD eIF3G 55 170 IPR024675 -
Sto8g2953 296 SMART rrm1_1 216 289 IPR000504 GO:0003723
Sto8g2953 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Sto8g2953 296 SUPERFAMILY RNA-binding domain, RBD 213 295 IPR035979 GO:0003676
Sto8g2953 296 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 47 296 - -
Sto8g2953 296 MobiDBLite consensus disorder prediction 189 214 - -
Sto8g2953 296 Gene3D - 187 296 IPR012677 -
Sto8g2953 296 CDD RRM_eIF3G_like 216 291 IPR034240 -
Sto8g2953 296 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 45 295 IPR017334 GO:0003743|GO:0005737|GO:0005852
Sto8g2953 296 Pfam Eukaryotic translation initiation factor 3 subunit G 50 171 IPR024675 -
Sto8g2953 296 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 47 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2953 Sto-Chr8 21845364 21849256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2953 47 294 Eukaryotic Initiation Factors Gene Family AT3G11400 64.483 2.88e-124 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2953 K03248 - gmx:100818725 416.772