Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2890 ATGGTCGTGAGCGGGGGGAGGCCAATGAAGCGGATGAAGAGGAGAGTCACGGCTGATTTCTGCGATTTCCTGACCTTCCCGTCGCCGGAGGATTTCTCCGGCGGGCCCTTCCGGACCAACGTGCGATCGTTCCTGTCGAAGCACGCGCTGTTGCCTCCGCCGTCGGCTCTGTTCCCTCACCTGCTAACTTGGCAGATCCTCTTCCGAGTCGGTGATCTGACGGACGGCCCGGAATCTAGCCCGGCGGTGGTGTGCCTCGACGTGATCGAAGAGGATGTGGCCAGATCCAGATCCGTGTACTGCGATCAGTGCCGAGTTGTTGgttGGAGTGGCCATCCAGTATGCGGGAAACGTTACCATTTTATAATCAAGGCCGATGGCAGTTCCATTGGTGGGTACCATAAGCCATGCATGTGCTGCGGAGACATATTGCATTTGTCAGAATCTAAGTGTAAGTCATGCAACCATGTGACAACCACAGATGATGTTGAAGACTGGATCTATCACCAGCTAGAAAATACGACTCATCTCTTACATGGTGTTGTCCATGCCAATGGTTATGGACACCTTCTTCGGGTTAATGGCAGAGAAGGTGGCTCAAAATTTCTTTCTGGATGCCACATTATGGACTTTTGGGATCGGCTCTCCAAGACACTTGGAGTTAGAAAAGTCAGCGTGATGGATGTATCAAAGAAATATGGATTGGAGTATCGCCTGCTCCACGCTATCACAAAAGGGAATCCTTGGTATGGTGATTGGGGTTATCAATTTGGCTCTGGCAGCTATGGTCTTACACATGAAGCATATAAGTCTGCTGTTGAAAGCCTGTGCAATCTGCCCTTGTCCATCTTTCTTACCCAGGGGCAGAAGTGTGACTCACATTTAAAAGATGTGATCTCATATTACCAGTCTTTGTCAAGAAATGAGCTTGTTAATATAAAGGACCTCTTTAGTTTTTTAATGGGTTTGATTCATGAAGCTCGTAAGGCTGCATCAAGAATTGATGATGTCTCCTGCAAGAAGCGACGTTTGAATGCTGCAGGAGTGTCATCTTCTTGGACAAAGAGTGACATTGAACGTGTGGAGGAAGCCATGCTTAGAGTGCTGCGTGCTGTGTCTGGGTCCAATTGGGTGAGCTGGCGTGCTTTAAGGGGTGCTGTCTGCAAGGTGGCCTCTCCTGAGCTGCTTGAGTACTGCCTTGGAGAATTGGGAGGGAAAGTGGTCCTTGGTGCAGGGCCAGCAGTGGTGAATACCCGATGTAATCCTGTTACTGGTATTTTCGAGTATAGATTAGAGACGGTCAACGATTCTTGCTATGGAATTGCAAGCAATGACTCTTCAGGCTTAATCTATCCATCTGAAATGAATCTTCTACACAACTTGAGATATTTATACAACTCTCTACTGAACCCTCAGATGTTGACAAGCTACGACCCGGAGGAGACAAGGGCACTTGCTATGACATCTGCTCAGAAACTTCTTGACTGCAAGCAGTTTGTAAAAGACTACAAACCAGAGACACTAACAGTAACAGACTCATCGAAGATACTCCTCTCATGTCAATTACAACTTGTAGATGAATCTGAAGATTCTTCCGCCGTACACCCTCCCCCAGAATACATCATCCTCCCCGTAAATGCCACAGTATCGGACCTCAAAATCGAAGCAGCAAATGCCTTTCAAGATGTATATATCATGTTTAGAAGACTTCAAGTCGACGAGCTTCTTGGCTATAGCGGTGTTGATGATTCCACCCAGGTCAAGCATTTGCTAGCAGGATCCAAATGTGAAGCCGCCGTTGTTCAGGTGCGAGGAAGGTGCGTCGTCGGCAAGAACGGGTTGAGCAAGTTCCAAATGGAACGGGGAACGGAGAGGTGGATTGTGGATTGCGGCTGTGGGGCGAAAGACGACGATGGGGAGAGAATGTTGGCCTGTGATATATGTGGAGTGTGGAGGCATACAAGGTGTTGTGGTATTAATGATGCAGATCCTGTACCTGCAAGGTTTGTATGCCCAAGATGCCAAAACTGTGAATCCAAACCCAAATGTAGTAGTAATAGTGGGCACTGTGAAGGTGAGATTGTGATTAATCTTGGTACTAACAGTGGCTTTGCCAGTGCCTTCTGA 2127 0.4791 MVVSGGRPMKRMKRRVTADFCDFLTFPSPEDFSGGPFRTNVRSFLSKHALLPPPSALFPHLLTWQILFRVGDLTDGPESSPAVVCLDVIEEDVARSRSVYCDQCRVVGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWIYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSKFLSGCHIMDFWDRLSKTLGVRKVSVMDVSKKYGLEYRLLHAITKGNPWYGDWGYQFGSGSYGLTHEAYKSAVESLCNLPLSIFLTQGQKCDSHLKDVISYYQSLSRNELVNIKDLFSFLMGLIHEARKAASRIDDVSCKKRRLNAAGVSSSWTKSDIERVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPELLEYCLGELGGKVVLGAGPAVVNTRCNPVTGIFEYRLETVNDSCYGIASNDSSGLIYPSEMNLLHNLRYLYNSLLNPQMLTSYDPEETRALAMTSAQKLLDCKQFVKDYKPETLTVTDSSKILLSCQLQLVDESEDSSAVHPPPEYIILPVNATVSDLKIEAANAFQDVYIMFRRLQVDELLGYSGVDDSTQVKHLLAGSKCEAAVVQVRGRCVVGKNGLSKFQMERGTERWIVDCGCGAKDDDGERMLACDICGVWRHTRCCGINDADPVPARFVCPRCQNCESKPKCSSNSGHCEGEIVINLGTNSGFASAF 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2890 708 SMART PHD_3 629 675 IPR001965 -
Sto8g2890 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 680 IPR013083 -
Sto8g2890 708 SUPERFAMILY FYVE/PHD zinc finger 618 676 IPR011011 -
Sto8g2890 708 Pfam PHD-finger 630 677 IPR019787 -
Sto8g2890 708 PANTHER OS01G0877500 PROTEIN 1 688 - -
Sto8g2890 708 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 688 - -
Sto8g2890 708 CDD PHD_MMD1_like 629 674 - -
Sto8g2890 708 ProSitePatterns Uncharacterized protein family UPF0054 signature. 179 189 IPR020549 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2890 Sto-Chr8 21143575 21152913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2890 80 674 PHD Transcription Factor Family AT5G22260 29.421 7.50e-86 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto8g2890 PHD 9.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2890 - - gmx:100818189 1062.37