Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2885 ATGGAGTCAGGAAATTCTTATATTGATGAGAGAAAGCCAAGCCCTGAATTAGATCAgaagaataagaataagaagaagatgatgatgaagataatAGTAGTGAAGTACAAGGAATGCCTAAAGAATCATGCAGCTTCCATTGGAAGGAATGCAAGAGATGGGTGTGGAGAGTTCATGGCTGGTGGGGAAGAAGGCTCTCCTGAATCCCTCAACTGCTCTGCCTGCAATTGCCATAGAAACTTCCACAGAAAACACTTGCAACAATATTCTcactatcatcatcatcatcatcatcatcctaaTTTGTGTCCCaagaataataatgatgatgatgatgatgatgatgatgatggtgatgagatTGGGAGGAAGAGGGTGAGGACAAAGTTCAGTGAGGAGCAGAAGGAGAAGATGCTGAGATTTGCAGAGAAAGTTGGGTGGAAGATGCACAAGTTGGAAGAGTCTATGGTGCAGCAGTTTTGCCATGAGGACCTATTGCAGAGGACACTCCATTTTTATGAATGCGAATCCTCTGCTGTTTCGGTTATGCTGTCAGGGTCTATTactaaccaataa 576 0.349 MESGNSYIDERKPSPELDQKNKNKKKMMMKIIVVKYKECLKNHAASIGRNARDGCGEFMAGGEEGSPESLNCSACNCHRNFHRKHLQQYSHYHHHHHHHPNLCPKNNNDDDDDDDDDGDEIGRKRVRTKFSEEQKEKMLRFAEKVGWKMHKLEESMVQQFCHEDLLQRTLHFYECESSAVSVMLSGSITNQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2885 191 MobiDBLite consensus disorder prediction 1 24 - -
Sto8g2885 191 MobiDBLite consensus disorder prediction 92 120 - -
Sto8g2885 191 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 17 163 - -
Sto8g2885 191 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 17 163 - -
Sto8g2885 191 Pfam ZF-HD protein dimerisation region 34 85 IPR006456 -
Sto8g2885 191 Gene3D - 107 170 - -
Sto8g2885 191 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 35 85 IPR006456 -
Sto8g2885 191 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 36 85 IPR006456 -
Sto8g2885 191 SUPERFAMILY Homeodomain-like 111 164 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2885 Sto-Chr8 21115830 21116524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2885 30 170 ZF-HD Transcription Factor Family AT2G02540 41.270 2.38e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Sto8g2885 ZF-HD_dimer 5.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2885 - - dct:110107603 147.517