LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g2846	ATGAAGACGCAGGCAGACGGTGCCGGAGCCGGAGCTGCTTCTGCTTCTCCCTCACCTAATCCCTGCGAAGGAGTGGAGAAGAAGAGCATAAATCCGGAGCTTTGGCAAGCTTGTGCAGGGCCGCTGGTGAACCTCCCGCCGGCTGGTACTCACGTGGTCTACTTTCCTCAGGGTCACAGCGAACAGGTTGCAGCATCTTTAAAGAAGGATGTGGATGGTCAGGTCCCAAACTATCCAAATCTTCCGTCAAAGTTACTCTGTCTTCTTCACAGTGTCACCTTGCATGCTGACCCAGAAACTGACGAAGTATATGCTCAGATGACACTTCAGCCGGTTCCTTCTTTTGACAAGGATGCATTATTAAGATCAGATCTTGCCCTCAAGTCGAGTAAACCACAACCTGAGTTTTTCTGTAAACAATTGACAGCAAGTGATACAAGTACACATGGAGGTTTTTCTGTACCCCGCCGTGCAGCAGAGAAGATTTTTCCTGCTCTTGATTACTCTATGCAACCACCTGCTCAAGAACTTGTGGCCAGGGATTTGCATGACAATGTTTGGACGTTCCGCCATATATATCGAGGACAACCAAAGCGTCACTTACTTACAACTGGATGGAGTCTATTTGTCAGTGGAAAGAGGCTTTTTGCTGGGGACTCCGTGTTGTTTATTAGAGACGAAAAACAGCAGCTTCTTCTGGGTATCAGACGAGCTAACAGACAACCTGCCAATATATCATCCTCAGTACTGTCAAGTGATAGTATGCATATAGGAATTCTGGCAGCAGCAGCCCATGCTGCTGCAAACAATAGCCCCTTCACTGTGTTTTACAATCCTAGAGCTAGTCCATCAGAATTTGTTATTCCTTTAGCCAAGTACTACAAGGCTGTTTACAGCCACCAAATATCACCTGGCATGCGCTTCCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGGTATATGGGTACAATTACAGGTATCAGTGATCTGGATCCTGTGAGATGGAAAAACTCACAATGGCGTAACTTGCAGGTTGGTTGGGATGAATCAACTGCTGGAGAAAGGCGTAGTAGGGTTTCAATCTGGGAAATTGAACCAGTGACTGCTCCTTTTTTCATCTGTCCACCCCCATTCTTCAGATCCAAGCGGCCAAGACAACCAGGGATGCCTGATGATGACCCCTCCGATTTTGATAACCTTTTCAAGCGGACTATGCCTTGGCTTGGGGATGACATGTGCATGAAAGATCCTCAAGCAATCCCTGGCCTGAGCTTAGTTCAATGGATGAACATGCAACAAAATCCTGCTCTATCTAGCTCATTGCAGCCAAATTATGTGCAATCTTTGCCTGGATCTGTTCTTCAAAATCTTCCTGGTGCAGATATTGCCCGTCAGCTTGGATTTTCTAATCCGCAGATTTCTCAGTCAAACAATGTAGCCTTCAACCCACAGAGGTTACTTCAGACTGCACAACAGCTTGATCATCTGCAGAAGATACCTTCTGCATCTAGCTCATTGGGAACAGTCATGCAGCCACAGCAACAGTTGGGTGATATTTCTCAACAACCTCGACAGAATTTGGGAAATCAAGCTATACCACAGAGTCAAGTTCAGACCCAACTTCTGCATCCCCAAAATCTTGTTCAAAGTAACAATTTTCTTCAGCAGCAGCAACCATCCATTCAAAACCATCAACTGCATAGAAGCCTCTCTCAGAATCTGCCTCAGCCACAGCAGCAGCAGACAATTATGGGTCAGAACCAACAGCAAAGTCTGATTCAGTCCCCTATGCCTGATCATGCCAGTCAACAATTGCAGATGTCTGATAACCAGATTCAACTTCAATTGTTACAGAAgcttcaacaacaacaacaaacactCTTGGCACAGCAATCAGTATTGCAGCAGCCTACTCAACTTACACAAATTCAAGACCAGCAAAGGCAGCTTTTAGATGCAGCTCAGAACTTCTCGAGGGGCCTAACACCGAGTCAAGTACTGGAGATTCCTCCACTGCTACCAAACTCACTCCCCGAGGCTAGTTCTCACCAGATGACAAAGATTAATGGCCAGACCAATATTCAGTTCTCTCATCCACCCCAGCAGCCAAAGCTTCAACAACAGCAACCTGGCATGCTGTCTGAGATCCCTGGGCATCTGGGGCTTCCCCCTAACCCTATGATCAACCACCTGTCTGTTGCTGGTAGTAGTATATTGACTGGAGCAGCTGGAGCAGGGCAATCTGTAATTACTGATGACATTCCATCTTGTTCCACTTCACCTTCCACAAATAACTGTGCCAATGCACTTCCACCTGTGAATTCCCGGATTCACAGGAACACGATGATAGGGGATGAAGTGGTTCAGTCTGCAGCCACGATCTTGAGTCCAAGTGCCATAGAAACCATGTCATCAAATGCAGGCTTGGTGAAAGATTTACAGCCAAAGTCTGAAGTTAAGCCTTCTTTAAACATAtccaaaaatcaaaatcaaggaAATTTTGCTCAGACATACTTAAATGGTGGAGCTGCACAAACAGATTATTTGGATACATCATCTTCTACAACTTCAGTTAGCCTTTCTCGGAATGATAATCATATGCATCAGAATAACAACCCATTATCTTACAATCCACAGTCAATGTTGTTTAGAGACAGTAGTCAAGATGGGGAATTTCAGGCAGATGCAAGGAACATTGTTCCATTCAGCAATAGCATTGACAGTCAACTAGGAATGCCACTAAATCCAGATTCTCTTTTAACCAAAGGAACAGTGGGGCTGGGGAAGGATATGTCGAATAATTTTTCTTCAGGAGGCATGCTTGGTACCTATGAAAGTAGCAGAGATGCTCAGCAGGAACTTTCATCTTCAATGGTATACAAACGTGGAGCTGTGGGTAGGTCCATAGACATAACCCGGTATTCGGGTTATGAGGAACTTAAACAGGATCTAGCTCGTAGATTTGGTATAGAGGGACAGTTGGAGGATCGGCAAAGGATAGGCTGGAAACTTGTTTATGTAGACCATGAAAATGATGTTCTTTTAGTGGGGGATGACCCCTGGGAGGAGTTTGTGAACTGCGTCCGCTGCATTAAAATCCTTTCTCCTCAAGAGGTGCAACAGATGAGCTTGGACGGGGACATCGGCAATGGTGGCCTTCCAAATCAAGCGTGTAGCAGCTCCGATGGTGGAAACACTTAA	3207	0.4496	MKTQADGAGAGAASASPSPNPCEGVEKKSINPELWQACAGPLVNLPPAGTHVVYFPQGHSEQVAASLKKDVDGQVPNYPNLPSKLLCLLHSVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPALDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPANISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHQISPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDDPSDFDNLFKRTMPWLGDDMCMKDPQAIPGLSLVQWMNMQQNPALSSSLQPNYVQSLPGSVLQNLPGADIARQLGFSNPQISQSNNVAFNPQRLLQTAQQLDHLQKIPSASSSLGTVMQPQQQLGDISQQPRQNLGNQAIPQSQVQTQLLHPQNLVQSNNFLQQQQPSIQNHQLHRSLSQNLPQPQQQQTIMGQNQQQSLIQSPMPDHASQQLQMSDNQIQLQLLQKLQQQQQTLLAQQSVLQQPTQLTQIQDQQRQLLDAAQNFSRGLTPSQVLEIPPLLPNSLPEASSHQMTKINGQTNIQFSHPPQQPKLQQQQPGMLSEIPGHLGLPPNPMINHLSVAGSSILTGAAGAGQSVITDDIPSCSTSPSTNNCANALPPVNSRIHRNTMIGDEVVQSAATILSPSAIETMSSNAGLVKDLQPKSEVKPSLNISKNQNQGNFAQTYLNGGAAQTDYLDTSSSTTSVSLSRNDNHMHQNNNPLSYNPQSMLFRDSSQDGEFQADARNIVPFSNSIDSQLGMPLNPDSLLTKGTVGLGKDMSNNFSSGGMLGTYESSRDAQQELSSSMVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDIGNGGLPNQACSSSDGGNT	1068

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g2846	1068	PANTHER	AUXIN RESPONSE FACTOR	20	960	-	-
	Sto8g2846	1068	PANTHER	AUXIN RESPONSE FACTOR	961	1062	-	-
	Sto8g2846	1068	Pfam	B3 DNA binding domain	137	238	IPR003340	GO:0003677
	Sto8g2846	1068	Gene3D	-	135	238	IPR015300	-
	Sto8g2846	1068	MobiDBLite	consensus disorder prediction	1048	1068	-	-
	Sto8g2846	1068	SUPERFAMILY	DNA-binding pseudobarrel domain	126	266	IPR015300	-
	Sto8g2846	1068	SUPERFAMILY	CAD & PB1 domains	972	1034	-	-
	Sto8g2846	1068	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	961	1062	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Sto8g2846	1068	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	20	960	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Sto8g2846	1068	Gene3D	-	301	372	-	-
	Sto8g2846	1068	SMART	B3_2	137	239	IPR003340	GO:0003677
	Sto8g2846	1068	Pfam	Auxin response factor	263	346	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Sto8g2846	1068	ProSiteProfiles	B3 DNA-binding domain profile.	137	239	IPR003340	GO:0003677
	Sto8g2846	1068	Pfam	AUX/IAA family	1003	1041	IPR033389	-
	Sto8g2846	1068	CDD	B3_DNA	136	228	IPR003340	GO:0003677
	Sto8g2846	1068	MobiDBLite	consensus disorder prediction	851	875	-	-
	Sto8g2846	1068	MobiDBLite	consensus disorder prediction	1	26	-	-
	Sto8g2846	1068	Gene3D	-	952	1045	-	-
	Sto8g2846	1068	ProSiteProfiles	PB1 domain profile.	956	1040	IPR000270	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g2846	Sto-Chr8	20704144	20710255	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g2846	19	495	B3 DNA Binding Superfamily	AT1G19220	71.875	0.0	681

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Sto8g2846		B3	1.6e-19	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g2846	-		-	ccaj:109803454	1677.14