Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2799 atggCTCTTCTTTATCTACCATTTCTCCTTCTGGGATTTGTGCTCTCCATGGTGTCCTCTGCTCAAGGATATGGCTATGGTGGTTGGAGTAGTGCTCATGCCACTTTCTATGGAGGCAGTGATGCTTCTGGAACAATGGGAGGGGCATGTGGGTATGGGAATCTGTACAGTCAAGGTTATGGTACAAACACAGCAGCATTGAGCAGTGCATTATTCAACAATGGCTTGAGCTGTGGTTCATGTTATGAGATTAGATGTGTGAGTGACCCACAATGGTGCCTCCCTGCTTCCATTGTGGTCACTGCCACTAATTTCTGCCCTCCAGGAGGCTGGTGTGACCCTCCAAACTCCCATTTTGATCTCTCCCAACCTGTTTTCCAGCAAATTGCTCAATACAAAGCTGGCATTGTTCCTGTCATTTACAGAAGGGTGAGGTGTAGGAGAAGAGGAGGAATAAGGTTCACTATCAATGGCCATTCCTACTTCAATCTTGTGCTTGTGACAAATGTTGGAGGTGCTGGTGATGCTCATGCAGTGGCCATCAAAGGCTCAAGAACAAGATGGCAAGCCATGTCAAGAAATTGGGGGCAAAATTGGCAAAGCAACTCTTACCTTAATGGACAGAGTCTTTCCTTTTTGGTGACCACAAGTGATGGAAGATCTGTTCTGTCCTACAATGTTGCTCCACCTTCTTGGTCCTTTGGACAGACCTATGTTGGAAGGCAATTTCGCTACTGA 738 0.4621 MALLYLPFLLLGFVLSMVSSAQGYGYGGWSSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSSALFNNGLSCGSCYEIRCVSDPQWCLPASIVVTATNFCPPGGWCDPPNSHFDLSQPVFQQIAQYKAGIVPVIYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDAHAVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSVLSYNVAPPSWSFGQTYVGRQFRY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2799 245 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Sto8g2799 245 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Sto8g2799 245 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Sto8g2799 245 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Sto8g2799 245 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576
Sto8g2799 245 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Sto8g2799 245 Pfam Expansin C-terminal domain 152 229 IPR007117 -
Sto8g2799 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Sto8g2799 245 SUPERFAMILY Barwin-like endoglucanases 28 169 IPR036908 -
Sto8g2799 245 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Sto8g2799 245 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Sto8g2799 245 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Sto8g2799 245 PRINTS Expansin signature 109 126 IPR002963 GO:0009664
Sto8g2799 245 PRINTS Expansin signature 126 139 IPR002963 GO:0009664
Sto8g2799 245 PRINTS Expansin signature 150 162 IPR002963 GO:0009664
Sto8g2799 245 PRINTS Expansin signature 162 183 IPR002963 GO:0009664
Sto8g2799 245 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Sto8g2799 245 PRINTS Expansin signature 226 242 IPR002963 GO:0009664
Sto8g2799 245 PANTHER EXPANSIN-A5 8 244 - -
Sto8g2799 245 Gene3D - 14 147 IPR036908 -
Sto8g2799 245 SUPERFAMILY PHL pollen allergen 148 239 IPR036749 -
Sto8g2799 245 Pfam Lytic transglycolase 64 141 IPR009009 -
Sto8g2799 245 PANTHER EXPANSIN-A15 8 244 IPR002963 GO:0009664
Sto8g2799 245 SMART dpbb_1 64 141 IPR007112 -
Sto8g2799 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
Sto8g2799 245 Gene3D - 151 243 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2799 Sto-Chr8 20286865 20289337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2799 10 244 Expansin Gene Family AT2G03090 76.923 2.11e-137 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2799 - K20628 gmx:100799370 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2799 8 20286865 20289337 Sto3g1562 3 11565865 11569998 ECH
Sto8g2799 8 20286865 20289337 Sto8g2799 8 20286865 20289337 ECH