Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2790 ATGGCAAGGAAGAGAAAGGCTTGTACtaatactactactactaccactACTAGTAGTAGTATAGAGGAAGCAATTGTTGAAGAGAGGAATGGTATGGAGTGGGATGAGATGGTGAAGGAGGCTTCAATTATGGGCCCGGGAGGGGCCCGGCGAGGCCGGAAGCGGTACGTGGGGGTCCGGCAGAGGCCGTCCGGGCGGTGGGTGGCCGAGATAAAGGACACCATACAGAAGATAAGGGTGTGGTTGGGGACTTTTGACACAGCAGAGGAAGCTGCTAGAGCCTATGATGAAGCTGCTTGCTTACTACGTGGAGCCAATACCAGAACAAATTTCTGGCCTTCTCCTCATtcctcttattcttcttcttcttcttcttctcattccACTCCTGCTCTTCCCTCTAAGATCACCAATCTTCTTCTTCAGAGGCTCAAAGCAagagataataataatagagatAACAACTGTAATTATAACCACCATCATCACAATtcttttcctcctccttcttctccttcttcttcttcttgttctgttCTCATCAATCACcaacagaagaagaagaagcaggagGAACAAGTGGACTTCTCATCAATTGATCAATTCTCTGACTTGTTCCTGAATGATCCTGAGGATTATGACAGTGAGAAATTCGACTGCATTGCTCGAAGTTTCGAGTCGTGTTTGACTGATCAGGAGAAGGAAGAGTTCAAGGGAaaacaagaacaagaagaagaggagaaatTGAGCAATtcaagagaggaagaagagagtgAGGAAGAAAGTAGTGGAAGTGGTGAGGAggttgatttagggtttggagtgcAGGATTTTGAATTTCTGGACAAAGTggtaccatcatcatcatcttcatcaacaacatcatcatcatcatcatcttgttTCTATTATTCTCCATTTGAGATGGCTGGAGAGatgggggaggaggaggaggaggaggatgaggATGAGCCTTCAATGGTGAGACAAGCCATGAAGAGGATGAAGTATGAGAGGAAGTTCTCTGCTTCTCTATATGCCTTCAATGGGATATCTGAGTGCTTGAAGTTCAAACttggatcatcatcatcatcatcatcaagagGAGTGTCCAATTCTATATCTGATCATCTAACCAATCTCCAGATGGCTTGTTCTACAAAGAACAAAACTCAAGAGCagaaaaataatgaagaaaTGGGTAAGAAAGAGCAAGAAAATAATCAACAAGCATCTTCACCTGAAAaTCAGCCAAAATATTCCAGAGAACACGAAGCTGGGCAAGGAAAGCAGCACAAAGATCCAAAAACAGAAACTGGGGGCCCTGGACCCTTTGAAGATCAAGCAGATATTTCTCCTCCCGAGTTTTGTAAAGCTGGCAAAAACCCATGA 1392 0.3391 MARKRKACTNTTTTTTTSSSIEEAIVEERNGMEWDEMVKEASIMGPGGARRGRKRYVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPSPHSSYSSSSSSSHSTPALPSKITNLLLQRLKARDNNNRDNNCNYNHHHHNSFPPPSSPSSSSCSVLINHQQKKKKQEEQVDFSSIDQFSDLFLNDPEDYDSEKFDCIARSFESCLTDQEKEEFKGKQEQEEEEKLSNSREEEESEEESSGSGEEVDLGFGVQDFEFLDKVVPSSSSSSTTSSSSSSCFYYSPFEMAGEMGEEEEEEDEDEPSMVRQAMKRMKYERKFSASLYAFNGISECLKFKLGSSSSSSSRGVSNSISDHLTNLQMACSTKNKTQEQKNNEEMGKKEQENNQQASSPENQPKYSREHEAGQGKQHKDPKTETGGPGPFEDQADISPPEFCKAGKNP 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2790 463 Coils Coil 239 262 - -
Sto8g2790 463 MobiDBLite consensus disorder prediction 381 463 - -
Sto8g2790 463 MobiDBLite consensus disorder prediction 150 194 - -
Sto8g2790 463 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Sto8g2790 463 Coils Coil 388 409 - -
Sto8g2790 463 MobiDBLite consensus disorder prediction 234 270 - -
Sto8g2790 463 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Sto8g2790 463 MobiDBLite consensus disorder prediction 234 248 - -
Sto8g2790 463 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Sto8g2790 463 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Sto8g2790 463 MobiDBLite consensus disorder prediction 311 325 - -
Sto8g2790 463 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Sto8g2790 463 CDD AP2 54 111 IPR001471 GO:0003700|GO:0006355
Sto8g2790 463 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 368 - -
Sto8g2790 463 MobiDBLite consensus disorder prediction 249 266 - -
Sto8g2790 463 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Sto8g2790 463 MobiDBLite consensus disorder prediction 418 440 - -
Sto8g2790 463 MobiDBLite consensus disorder prediction 309 328 - -
Sto8g2790 463 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Sto8g2790 463 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 24 368 - -
Sto8g2790 463 MobiDBLite consensus disorder prediction 160 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2790 Sto-Chr8 20141369 20144668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2790 53 111 AP2-EREBP Transcription Factor Family AT5G19790 84.746 1.67e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto8g2790 AP2 3.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2790 K09286 - gmx:100796159 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2790 8 20141369 20144668 Sto8g2790 8 20141369 20144668 ECH