Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2788 ATGGAGGGAGGAAATTTTTCTGAATTCTTGTCTAGGCTAATAGTTTTGGCTGATGAGGTTGCTTCCTCTGCTAAAAACTGTGAAATTCAGAGTAGTGTGTTGATTGAGTTCTCCGTGTTGGTTGAGAAATTTGCACCAATCTTCTGTGATTTGAGAGACAAAAGCACAATCATGGACAAACAGCCTATCAGAAAATCATTGGAATCGCTCGAGAACGAGCTTAGCCGTGCTAAAGCTTTGATAAAAAGCCCTAATTTGAAGCATCCCACTAAACAGATTGAGGACATAACTCGTGATCTCGGCCGATCGTTAGGCTTGCTGCTTGTGTCTAGCCTTGAAGTGTCAACAGATTTTAGAGAGAAGATTGGAACATTGCAAAGGGAGTTGATGAATGCTAGATTTGGTGGAAATATGAGTCCACCTTCAACTCCTGGATCAGAATCTGCCAGTGATGTGAAGCTTGAGAGGGAAATAAAAGAGGAGATAGTCAATATTACTGTTGATGATGTTGTATTGCAACTTAAACATGGTAATGATGAAGAATTTGCAGTTGCACTTTTGAGACTGAAGGAGTTCATGAGGGGTGAAAAAGCAGATAGCGGTTTAATCAACGAGGAAGCAGTCGTTGCCGTTCTTTCCAATCGTCTAGGCTCAAGTAAGGCAGACAGTAGGCTGACCATCATTCAATTACTAAGAAGTATTGCTTCCGGCAATGATGAGAAAAAGGAGAAGATGGCAGATATTGAGTTTTTATCGGCTGTGGTGAAGTCTCTAACACGGGATGCCGAGGAGAGGAGGGAAGCAGTGGGGCTTTTGCTAGACCTCTCTGATCTTCCTGCAGTTAGGCGGCGAATTGGAAGAATTCAGGGATGTATTGTTATGCTAGTTGCTATCCTTAATGGAGATGATACTGTTGCTTCACATGACTCAGCAAAGTTGTTGAATATATTGTCTAGTAATTCTCAAAATGCACTTCATATGGCGGAGGCGGGTTACTTTAAGCCACTGGTGCACTATTTGAAGGAAGGCTCTGACATGACAAAGATCCTCATGGCAACGGCACTTTCTAGATTGGAGCTCACTGATCATAGCAAACACTCCCTTGGAGAAGAAGGCGCAATTGAGCCCTTAGTCAACATGTTTAATTCTGGGAAGCTTGAGTCTAAGTTATCAGCTCTAAATGCACTGCAAAACTTATCAAGCTTGACAGAAAATGCACAACGTTTGATCAGATCAGGAATTGTGGTATCTCTGCTTCAACTTCTTTTCTCCGTAACGTCTGTACTCATGACTCTACGCGAGCCTGCATCGGCTATTCTTGCAAGAATTGCTCAGTCAGAACCCATACTTGTTAATCAAGATGTGGCTCAGCAGATGCTCTCGCTTTTGAATCTTTCCAGCCCAGTAATTCAGACTCATCTATTAGAAGCACTAGATAGCATTGCTGCGCATCCCGGTGCATCCAAAGTACgaagaaaaatgaaggaaaaaggTGCCCTTCAGCTTCTTTTACCCTTTCTGATGGAAACCAATACTAAAATACGAAGTAAGGCATTGCATTTGTTGTACACTCTTTCCAAAGATCTAACAGAAGAGTTGACAGAACATCTTGATGATACCCATCTTTTTAATGTTGTTAGTATTATCTCATCATCAACATCAGATACCGAAAAAGCTGCTGCTGTTGGTTTACTGAGTAATCTTCCTGTTAGTGATAAAAAAGTGACAGATGTACTGAAGAGGGCAAATTTACTACCCATTTTGATATCCATTATGAGTTCAGGCACAGGAAGTAATTCACCCACAACAAGTGCCTTAGCGCCGAGTGTTGCGGGTGTCATAATCCGATTCACAAATCCTTCTGACAAGAAACTACAACTTTTCTCAGCAGAACATGGGGTGATTCCGTTACTTGTAAAATTGCTATCCAGTGGTTCACCGATTGCAAAATCCAGAGCCGCGACCTCACTGGCTCAATTATCACAGAATTCTCTGTCTCTTAGGAGGTCTAGAAAATCAAGATGGTTGTGTATGCCTCCCTCTGTGGATGCACATTGTGAAGTTCATGATGGTTATTGCTTAGTGAAAAGCACATTTTGTCTAGTCAAAGCCGGCGCCATTCCTCCGCTTATCCAAATAGTAGAAGATAAAGAGAAGGAAGCTGTTGAGGCTGCTCTATGTGCCCTTTCAACTCTCTTGCAAGATGAAATCTGGGAAGGCGGTGTCAATTGCATCGCCAAATCGTCCGGTGTTCAGGCTATTATAAAGATTTTAGAAGTGGGGGATGTAAAGGTTATAGAGAAAGCACTATGGATGTTGGAGAGAATATTCAGGGTTGAAGAACAAAGAGGTGAATATGGAGAATCTGCTCAGGTTGTTCTTATTGATCTTGCCCAAAAGAATGATTCTAGATTGAAATCAGCTGCTGCAAAAGTATTAGCACAGCTAGAGCTCTTGCAAGTTCAATCAAGTTACTTCTAG 2481 0.416 MEGGNFSEFLSRLIVLADEVASSAKNCEIQSSVLIEFSVLVEKFAPIFCDLRDKSTIMDKQPIRKSLESLENELSRAKALIKSPNLKHPTKQIEDITRDLGRSLGLLLVSSLEVSTDFREKIGTLQRELMNARFGGNMSPPSTPGSESASDVKLEREIKEEIVNITVDDVVLQLKHGNDEEFAVALLRLKEFMRGEKADSGLINEEAVVAVLSNRLGSSKADSRLTIIQLLRSIASGNDEKKEKMADIEFLSAVVKSLTRDAEERREAVGLLLDLSDLPAVRRRIGRIQGCIVMLVAILNGDDTVASHDSAKLLNILSSNSQNALHMAEAGYFKPLVHYLKEGSDMTKILMATALSRLELTDHSKHSLGEEGAIEPLVNMFNSGKLESKLSALNALQNLSSLTENAQRLIRSGIVVSLLQLLFSVTSVLMTLREPASAILARIAQSEPILVNQDVAQQMLSLLNLSSPVIQTHLLEALDSIAAHPGASKVRRKMKEKGALQLLLPFLMETNTKIRSKALHLLYTLSKDLTEELTEHLDDTHLFNVVSIISSSTSDTEKAAAVGLLSNLPVSDKKVTDVLKRANLLPILISIMSSGTGSNSPTTSALAPSVAGVIIRFTNPSDKKLQLFSAEHGVIPLLVKLLSSGSPIAKSRAATSLAQLSQNSLSLRRSRKSRWLCMPPSVDAHCEVHDGYCLVKSTFCLVKAGAIPPLIQIVEDKEKEAVEAALCALSTLLQDEIWEGGVNCIAKSSGVQAIIKILEVGDVKVIEKALWMLERIFRVEEQRGEYGESAQVVLIDLAQKNDSRLKSAAAKVLAQLELLQVQSSYF 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2788 826 Pfam Armadillo/beta-catenin-like repeat 700 732 IPR000225 GO:0005515
Sto8g2788 826 SUPERFAMILY ARM repeat 373 781 IPR016024 -
Sto8g2788 826 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 826 - -
Sto8g2788 826 SMART arm_5 320 360 IPR000225 GO:0005515
Sto8g2788 826 SMART arm_5 487 527 IPR000225 GO:0005515
Sto8g2788 826 SMART arm_5 738 778 IPR000225 GO:0005515
Sto8g2788 826 SMART arm_5 622 662 IPR000225 GO:0005515
Sto8g2788 826 SMART arm_5 402 445 IPR000225 GO:0005515
Sto8g2788 826 SMART arm_5 238 277 IPR000225 GO:0005515
Sto8g2788 826 SMART arm_5 361 401 IPR000225 GO:0005515
Sto8g2788 826 SMART arm_5 694 734 IPR000225 GO:0005515
Sto8g2788 826 Gene3D - 164 299 IPR011989 -
Sto8g2788 826 SUPERFAMILY ARM repeat 166 484 IPR016024 -
Sto8g2788 826 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 372 414 IPR000225 GO:0005515
Sto8g2788 826 Gene3D - 310 673 IPR011989 -
Sto8g2788 826 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 5 826 - -
Sto8g2788 826 Gene3D - 684 820 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2788 Sto-Chr8 20120317 20123875 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2788 177 826 U-box Gene Family AT1G20780 29.738 2.20e-53 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2788 K08332 - gmx:100791453 1170.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2788 8 20120317 20123875 Sto8g2788 8 20120317 20123875 ECH