Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2780 ATGGGGTTGAAACTTACGAAGGAGGGGGCACCCAAAGTTGAAAACCTGAGTTTACAGCACCATATGATCAATTACATTgccaaaaatttatatattcgTAAATTGGTATCTAAGCAACGGAGGAGGATGCTCATTGCTGGCTATGATCTTGACATGTCATATATCACAGATCGATTACTAGCAATGTCATTTCCTGCAGAACGTATGCGGGCAATGTATAGAAATCCTCTGTGGCAGGTCAAATCTGTTCTGGACATGAGGCATCATGAGCATTATAAGaTATATAATCTCTGTATAGAAGAAAATTATGATCCAGCACACTTTTATGGCCGTGTGGAAGCATATCCGTTCGACGACAACCATGTACCACCTCTTGAAATGCTCAAGAAATTCTGTGAAAGTGTGCATGCGTGGCTATCAAGCGACCCAAAAAATATTGCTGTTGTTCATTGCATGGCAGGGAAGGGTAGAACTGGCTTAATGGTATCTGCATACCTAGTTTACAGTGGCATGTCAGCAGATGAGGCTCTTCAATTGTATGCAGATAGACGGACAACCAATAATGAAGGAGTATCAATACCAAGCCAACGCCGTTATGTAGAGTACTGGGAAAGTATGCTTTCAGTTCCAAGAGGCATTGGTTCTGGGCCAGTAAATGTGAGCCTACCTCAACAAAGTAGCAGAGAATTGCGGCGAATCCGGCTTTATGATACAGTTAACATTGAGCAAATCTTCTTTGTGATCTTAGAGATGCAGGAGGTTCCTAATCAGGCCTACCGTCCATCGGTGGAGATTACCAGGAGCAGCTGCAGACAGATTAAGAAAGGGTATCAGCGAAACTACAGTCCTCGCTATTATCTTTCTTAcattgaagatgatgaagatggaacTGGATCAGACTTAGATGAACCTCGTGTTGTAGTCCAAATGGACACTGAAGATCCTGCAATCTACCAAAAATCTTGTCTAGACCATTATTTTGACAACCCTATTCAAGTTAATGGAGATGTTCGTGTCATATTCTACCAGAAAATGATGGGAGGGCGTCTTTTCTACTGCTGTTTTAATACAGCTTTTATTAAGAACGGTTTACTACAGCTGAAAACAAAGGACTTGGACAAATTTGGGAAAAAAGGAAGATCAATATGTGGGCCAGCCTTCTGCCTTGAACTTCTGTTTGGCCCTGCAAATTCAAAGCATTCACCAACTCTTACCAATGATGAAGTTTCTAGTTATGAATTTCTCTAA 1248 0.4014 MGLKLTKEGAPKVENLSLQHHMINYIAKNLYIRKLVSKQRRRMLIAGYDLDMSYITDRLLAMSFPAERMRAMYRNPLWQVKSVLDMRHHEHYKIYNLCIEENYDPAHFYGRVEAYPFDDNHVPPLEMLKKFCESVHAWLSSDPKNIAVVHCMAGKGRTGLMVSAYLVYSGMSADEALQLYADRRTTNNEGVSIPSQRRYVEYWESMLSVPRGIGSGPVNVSLPQQSSRELRRIRLYDTVNIEQIFFVILEMQEVPNQAYRPSVEITRSSCRQIKKGYQRNYSPRYYLSYIEDDEDGTGSDLDEPRVVVQMDTEDPAIYQKSCLDHYFDNPIQVNGDVRVIFYQKMMGGRLFYCCFNTAFIKNGLLQLKTKDLDKFGKKGRSICGPAFCLELLFGPANSKHSPTLTNDEVSSYEFL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2780 415 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Sto8g2780 415 CDD PTP_PTEN 51 204 IPR045101 GO:0016791
Sto8g2780 415 Gene3D - 284 398 - -
Sto8g2780 415 Pfam Tyrosine phosphatase family 133 183 IPR026893 GO:0004721
Sto8g2780 415 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Sto8g2780 415 PANTHER BNAC03G16750D PROTEIN 1 409 - -
Sto8g2780 415 ProSiteProfiles C2 tensin-type domain profile. 241 396 IPR014020 -
Sto8g2780 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Sto8g2780 415 Pfam C2 domain of PTEN tumour-suppressor protein 314 393 IPR014020 -
Sto8g2780 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 184 IPR000387 GO:0016311|GO:0016791
Sto8g2780 415 SMART PTEN_C2_2 223 395 IPR014020 -
Sto8g2780 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 1 409 - -
Sto8g2780 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 207 IPR029021 -
Sto8g2780 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 300 395 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2780 Sto-Chr8 20036799 20040950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2780 1 410 Protein tyrosine phosphatase (PTP) family AT5G39400 66.024 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2780 K01110 - gmx:100809938 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2780 8 20036799 20040950 Sto8g2780 8 20036799 20040950 ECH