LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g2760	ATGGGTTCCTTGGGTGAAGAGCTTGAAAGGGCAAGGGCATGGCCTTATTTGGGTGCAATTTTGTTACAATTTGGGTGTGGAGGAATGGCTGTTATATGCAAATTTGCCCTTGATCAAGGCTTGAGCCAGCATGTTCTAGTAGTATATCGTCATGCTCTAGCCTTCCTTATCATTTCTCCTTTTGCACTTTACTATGATAGGAATTCAAGGCCTAAGATGACACCTTCTGTCTTGGGTAAGATTATGCTTCTTGCATTATCAGAGCCTGTTTTAGATCAGAACTTGTACTACACTGGGATGAAGTATACTACAGCAACCTACACTTGTGCTTTGGCCAATGTCATTCCTGCCTTCTCATTTCTTTTGGCTTGGGCTTTAAAATTTGAAAAGGTGAACATTCGGAGAATGTACAGTATAGCAAAGATATCAGGAACTGCAATAACGGTCGGAGGAGCAATGATGATGACTCTTACCAAAGGGGCAATGTTGAATTTGCCTTGGACAAAGGAAATGACCAATCAAAATTCAGAAAATATtaatgtttcttcttcttcaaataaTCACAATCTCATTTATGGGGCTCTTATGATAGCAACAGTTGTAATTGAATGGCATAATCCCTCTGCTTGGTCCATTCACTTGGACTCTAAATTACTAGCTGTTGTCTATAGTGGAGTGATATGTTCAGGGTTTGCCTACTATGTTCAAGGACTAATAGTGAATGCAAAAGGGCCAGTTTTTTTGAGTGCCTTTAGTCCCTTAAGCATGGTCATTGTAGCAATTATGGGTTCTATCTTTCTAGCTGAAAAAATCTACATTGGCAGGGTTTTTGGAGcaattgtgattgtgattgggcTATATATGGTTTTATGGGGAAAAAGCAAAGAGTGTGATGAAATAAAATCATCTTCACCAAATGCTTCTAAATCTAATAGCTCACAGGCGCTCGGCGGCCACCGCGCCAGCCACAAGAAGCCGCGAATCGTCGCCGGCGACCACAACAACGACGGATcgccgtcgtcgtcgtcgtcgtcggtGGCGGCGATTAAGCCTAAGACTCACGAGTGCTCCGTTTGCGGATTGGAGTTCGCGATCGGTCAGGCCTTGGGAGGTCACATGAGGAGGCACAGACACAGAGTAGAAGTGAAATCGCGGATCGATCTTCACAATAACGACGATGAAGACGACGATGATTCGATGGTGACCGTGACTACGAGTACCGTAGATCTAGAATCTTCTTCTTCGCTCACAGAGATTCGGAAGAGGAAGGAgctggaggaggaggaagatgatagaAGAATAAGAAGTAAGAGATCCTCTGTTTTGTTTCTGGATTTGAACTTGACGCCTTCTGAGAATAACGAATTGCAATTTCTGAAGATCGCTGCTAATACTGCTACGACTACTTCTAATCTGGTGGATTGCTTCTATTAA	1434	0.4003	MGSLGEELERARAWPYLGAILLQFGCGGMAVICKFALDQGLSQHVLVVYRHALAFLIISPFALYYDRNSRPKMTPSVLGKIMLLALSEPVLDQNLYYTGMKYTTATYTCALANVIPAFSFLLAWALKFEKVNIRRMYSIAKISGTAITVGGAMMMTLTKGAMLNLPWTKEMTNQNSENINVSSSSNNHNLIYGALMIATVVIEWHNPSAWSIHLDSKLLAVVYSGVICSGFAYYVQGLIVNAKGPVFLSAFSPLSMVIVAIMGSIFLAEKIYIGRVFGAIVIVIGLYMVLWGKSKECDEIKSSSPNASKSNSSQALGGHRASHKKPRIVAGDHNNDGSPSSSSSSVAAIKPKTHECSVCGLEFAIGQALGGHMRRHRHRVEVKSRIDLHNNDDEDDDDSMVTVTTSTVDLESSSSLTEIRKRKELEEEEDDRRIRSKRSSVLFLDLNLTPSENNELQFLKIAANTATTTSNLVDCFY	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g2760	477	Pfam	C2H2-type zinc finger	354	377	-	-
	Sto8g2760	477	Pfam	C2H2-type zinc finger	312	326	-	-
	Sto8g2760	477	Pfam	EamA-like transporter family	187	290	IPR000620	GO:0016020\|GO:0016021
	Sto8g2760	477	Pfam	EamA-like transporter family	14	140	IPR000620	GO:0016020\|GO:0016021
	Sto8g2760	477	PANTHER	WAT1-RELATED PROTEIN	11	204	-	-
	Sto8g2760	477	PANTHER	WAT1-RELATED PROTEIN	198	306	-	-
	Sto8g2760	477	PANTHER	WAT1-RELATED PROTEIN	11	204	IPR030184	GO:0016021\|GO:0022857
	Sto8g2760	477	PANTHER	WAT1-RELATED PROTEIN	198	306	IPR030184	GO:0016021\|GO:0022857
	Sto8g2760	477	MobiDBLite	consensus disorder prediction	303	318	-	-
	Sto8g2760	477	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	209	294	-	-
	Sto8g2760	477	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	49	157	-	-
	Sto8g2760	477	MobiDBLite	consensus disorder prediction	301	347	-	-
	Sto8g2760	477	ProSitePatterns	Zinc finger C2H2 type domain signature.	356	378	IPR013087	-
	Sto8g2760	477	ProSiteProfiles	Zinc finger C2H2 type domain profile.	354	381	IPR013087	-
	Sto8g2760	477	SUPERFAMILY	beta-beta-alpha zinc fingers	351	379	IPR036236	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g2760	Sto-Chr8	19792684	19800139	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g2760	12	355	Nodulin-like Gene Family	AT2G39510	46.770	1.10e-111	333

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g2760	-		-	pop:7469803	347.051