LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g2756	ATGGGTATCAAATTTTATACCCGGCCGAAGACAGATCCGAGGACGGAGAAAATATTAACTATCGAAGCCAAAAATGGAGAATACAGAGCTTTCAAGAGCTGTTGGCAAGAGTTCGCAATGGCTCCTGCGAAGGTGGACAGTACTAAGAAGGCTGATCCTAAAGGACAGGCCTTGAAGACAGCCAAGGCTTTGAAGTCAGGCGCCGCCACGATTAAGAAGAAGGCTAAGAAGATCAGGACATCGGTCACATTCCATCGGCCGAAGACATTGAAGAAGGATAGGAACCCCAAGTATCCTCGCATTAGCGCACCGCCTAGGAACAAGTTGGATCATTACCAAATTCTTAAATACCCTCTTACTACTGAATCTGCAATGAAGAAGATCGAGGATAACAACACACTTGTTTTCATTGTTGACATCCGCTGTGACAAGAAGAAGATCAAAGATGCAGTTAAGAAGATGTATgatattcaggccaaaaaagtGAACACTCTGATCAGGCCTGATGGAACTAAGAAAGCTTATGTTAGATTGACTCCAGATTATGACGCCTTGGATGTCGCCAATAAAATTGGTATCATATAA	585	0.4205	MGIKFYTRPKTDPRTEKILTIEAKNGEYRAFKSCWQEFAMAPAKVDSTKKADPKGQALKTAKALKSGAATIKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRCDKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g2756	194	PANTHER	60S RIBOSOMAL PROTEIN L23A	40	194	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Sto8g2756	194	Hamap	50S ribosomal protein L23 [rplW].	114	194	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Sto8g2756	194	Gene3D	-	75	194	IPR012677	-
	Sto8g2756	194	PANTHER	60S RIBOSOMAL PROTEIN L23A-2	40	194	-	-
	Sto8g2756	194	Pfam	Ribosomal protein L23	114	176	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Sto8g2756	194	ProSitePatterns	Ribosomal protein L23 signature.	172	187	IPR001014	-
	Sto8g2756	194	Pfam	Ribosomal protein L23, N-terminal domain	54	104	IPR005633	-
	Sto8g2756	194	TIGRFAM	uL23_arch: ribosomal protein uL23	118	194	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Sto8g2756	194	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	111	187	IPR012678	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g2756	Sto-Chr8	19752718	19758316	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g2756	40	194	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	87.742	1.65e-68	204

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g2756	K02893		-	oeu:111379883	285.804