Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2744 ATGGAAGTAGAGGTCAAGCTCCGCCTCCCAGACTCACACTCTCACCAGAAACTCTCCAATCTCCTCGCCCCATTCCACgccgaaaccctaatccaagAGAACGTCTTCTTCGACGGCGCGAACGCCCAGCTCACCTCCAATCTCGCCGCCCTCCGGATCCGATTCTACAATCTCGATTCCTGCGTCCTCTCCCTCAAATCCAGGCCCGTGATTTCCGACGGGATCAGCCGGATCGAGGAGCGCGAAGAGCCGTTCGACGCCGCGCTTGGTCGCGCCTGCATCGCGGAGCCATGGCGGCTCTCGAGAGTGGAATCGTCGGAGATACTGAGGAGAGTGAAAGATGAGTTCAAGgttggagaaggagaaggaggaggaggaggatttGTGTGCTTGGGTGGGTTTAGGAATGTGAGAGGTGTGTATGAATGGAATGGGTTGAAATTGGAGGTTGATGAGAGTAATTATGATTTTGGGACGAGCTATGAGATAGAATGTGAGAGTGTTGAACCGGAGAGAGTGAAGAAGGTGCTGGAGAATTTCTTGAATGACAATGGAATCCCTTATTCTTACTCTAATCTTTCCAAATTTGCTGTTTTCAGGGTTCCCGGAGAAGCTAGGAAGCCGCCTGCTGCAGCAAAGCTTGCGAGGATCAAGGTTCACGAGCTGCGGCAGAAGAACAAGGCGGAGCTGCTGAACCAGCTCAAGGATCTCAAGGCCGAGCTTGCTTTGCTTCGCGTCGCTAAGGTCACTGGCGGTGCTCCTAACAAGCTCTCCAAGATAAAGGTGGTGAGATTGTCGATTGCGCAGGTTTTGACGGTGATTTCTCAGAAGCAGAAGGCTGCGTTGAGAGAAGCTTACAAAAACAAGAAGTACTTGCCTCTCGATCTGCGTCCCAAGAAGACCAGGGCTATTCGCAGACGCCTTACCAAGCACCAGGCATCATTGAAGactgaaagagagaagaagaaggaaacatACTTTCCAATGAGGAAATATGCTATTAAGGTGTAG 1011 0.4777 MEVEVKLRLPDSHSHQKLSNLLAPFHAETLIQENVFFDGANAQLTSNLAALRIRFYNLDSCVLSLKSRPVISDGISRIEEREEPFDAALGRACIAEPWRLSRVESSEILRRVKDEFKVGEGEGGGGGFVCLGGFRNVRGVYEWNGLKLEVDESNYDFGTSYEIECESVEPERVKKVLENFLNDNGIPYSYSNLSKFAVFRVPGEARKPPAAAKLARIKVHELRQKNKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKETYFPMRKYAIKV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2744 336 CDD Ribosomal_L29_HIP 221 277 - -
Sto8g2744 336 Gene3D - 291 336 - -
Sto8g2744 336 ProSiteProfiles CYTH domain profile. 1 203 IPR023577 -
Sto8g2744 336 SMART CYTH_2 1 195 IPR023577 -
Sto8g2744 336 Pfam CYTH domain 2 186 IPR023577 -
Sto8g2744 336 Gene3D - 214 290 IPR036049 GO:0003735|GO:0005840|GO:0006412
Sto8g2744 336 SUPERFAMILY CYTH-like phosphatases 1 191 IPR033469 -
Sto8g2744 336 TIGRFAM L29: ribosomal protein uL29 221 277 IPR001854 GO:0003735|GO:0005840|GO:0006412
Sto8g2744 336 SUPERFAMILY Ribosomal protein L29 (L29p) 217 278 IPR036049 GO:0003735|GO:0005840|GO:0006412
Sto8g2744 336 PANTHER OS08G0299200 PROTEIN 2 201 - -
Sto8g2744 336 PANTHER TRIPHOSPHATE TUNEL METALLOENZYME 3 2 201 - -
Sto8g2744 336 Gene3D - 1 202 - -
Sto8g2744 336 CDD CYTH-like_Pase 2 177 - -
Sto8g2744 336 Hamap 50S ribosomal protein L29 [rpmC]. 217 277 IPR001854 GO:0003735|GO:0005840|GO:0006412
Sto8g2744 336 Pfam Ribosomal L29 protein 221 277 IPR001854 GO:0003735|GO:0005840|GO:0006412
Sto8g2744 336 Coils Coil 220 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2744 Sto-Chr8 19597064 19606502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2744 214 336 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 89.431 2.58e-70 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2744 - - gmx:100818552 301.212