Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2722 ATGTTTCACGATCcctccaccgccgccgccgtcaCCGATGTCGCCGCCGCCGCGGCGCCGTGGCCGACTTACACGAGGTGGACTCGCGAGCAGGACAAGCTGTTCGAGGAGGCTCTCTTGTTGTTCCCGGAGGAGTGCCCCGACCGCTGGGAGAAGATCGCCGAGAATGTCCCCGGGGCGTCGCCGACCGACGTCCGGGAGAGGTACGAGGAGCTGGTCCACGACGTGATGGAGATTGACGCCGGGAGGGTCCAGGTCCCGCCCTACCCGGAGATCCCGGCCGGGAGCTGCTCCTCCGGTTGGGACTCGGCGAATCAGATTTCGTTCTCGAAACCTAGGCATGGAGATGcggagaggaagaagggaaCTCCTTGGACTGAGGAAGAACACAAGCTGTTCCTTGTCGGACTGCGCCAATACGGCAAGGGAGACTGGAGGAGCATTTCGAGAAACGTCGTGGTGACTAGAACACCGACTCAGGTAGCCAGCCATGCCCAGAAGTACTTCCTTCGCCAAAACTCTGGAGGGaagaaagagaggaaaagatCAAGCATCCATGACATAACTACAGTGGATAGCAACCTCGTCTCCATGGATCACAGCCGTGTTGCTCCGCCGGGCGTCCCGGTGCAGCAGGCGCAGCCGGTGCATCCATTTAACCCTCAAGATCACTTTATTGACCAATCGGCCGGTGGCTTTGGGTACCCTAACTACGGCGGCTTTTAA 726 0.5523 MFHDPSTAAAVTDVAAAAAPWPTYTRWTREQDKLFEEALLLFPEECPDRWEKIAENVPGASPTDVRERYEELVHDVMEIDAGRVQVPPYPEIPAGSCSSGWDSANQISFSKPRHGDAERKKGTPWTEEEHKLFLVGLRQYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSGGKKERKRSSIHDITTVDSNLVSMDHSRVAPPGVPVQQAQPVHPFNPQDHFIDQSAGGFGYPNYGGF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2722 241 SMART sant 121 171 IPR001005 -
Sto8g2722 241 SMART sant 23 75 IPR001005 -
Sto8g2722 241 CDD SANT 124 169 IPR001005 -
Sto8g2722 241 ProSiteProfiles SANT domain profile. 120 173 IPR017884 -
Sto8g2722 241 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Sto8g2722 241 SUPERFAMILY Homeodomain-like 119 173 IPR009057 -
Sto8g2722 241 CDD SANT 26 73 IPR001005 -
Sto8g2722 241 SUPERFAMILY Homeodomain-like 26 80 IPR009057 -
Sto8g2722 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Sto8g2722 241 Gene3D - 123 174 - -
Sto8g2722 241 ProSiteProfiles Myb-like domain profile. 26 73 IPR001005 -
Sto8g2722 241 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 24 215 - -
Sto8g2722 241 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 24 215 IPR043363 -
Sto8g2722 241 Pfam Myb-like DNA-binding domain 124 169 IPR001005 -
Sto8g2722 241 Pfam Myb-like DNA-binding domain 26 70 IPR001005 -
Sto8g2722 241 Gene3D - 23 86 - -
Sto8g2722 241 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2722 Sto-Chr8 19283192 19284923 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto8g2722 Myb_DNA-binding 4.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2722 - - adu:107467340 286.574