Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2705 ATGGACAGAGAGAAAGTGAAGCTTGAGTACATCACTGATGATCTTAAAAGAAAAGTATCGTTCAGGAAAAGGAAGGAAAACGTCATAAAGAAGACAAGTGAACTCAATATCCTTTGTGATGTTGATGCTGCTGCTATTATTTACAGTGGGCGCTCTGATTCACGTCCCCAGGTTTGGCCAGATGATCAAGGAGTCCATAGGTTTCTTGAGAAGTACCATGGTAGGCCAGTGTTGGAGAAGACCTTGAACCAGGAAGGATTAATCCAGCAAAGGCTTCTCAAGGAGAAACAATATTTGAAGAAGCTATCTAATGAAAATTACGAGGAAGAACTATCTCAGCTCATGATCAACTATATGGGTGGGTATGCAGATCCTACCATGGTGTCAGAGAATGCACTTCATTTGAAGATGTTGGTTGAGCAGAATTTGAAGGAGATTGATAGGGTGATGGAGGCATCTGGGAAAGAGGATGAAGTGTATGTTCCAGCTCCACCAATGTCTGAGGAGGGATTGCTGATTAATGGAGAAAATGAGAATGGCCAGATTCTGCATCATCATGGCATGGGATCTGGAAACTGGAATAGCCCATCATGCTGGAATAACATGGAGAATTCGTATGGGATGTGCTTAAATTTTGTGAACCTTGGAGTTAGGCTTAGAgggaagaTGAAGATGCCGCCTCGAAGACATACACTTCGTAGTGTGGCAAGTGATGGTGAAAGTTCTGATGAGGCTTCTACTCAGCCTGCTGACCAACACATAAGAGGTCggggccgaggtagaggccaagGAGTGCGAGGCCGAGGAGCACGGGTGAGGGGTGGTAGAGCCTCTCAAACCACTAGAGAGAGCATTCCTGCAGAAACAGAAAATCGTCGCCCACCACGACGTTCAACACTTGAAGCAGCGGTTGTAGGATTGCAAGGAGTCGTAGAGGCTCTAACAGGTCTAATAGCTGAACAGAGAGCTGAGGATGCCCCTTAG 984 0.4411 MDREKVKLEYITDDLKRKVSFRKRKENVIKKTSELNILCDVDAAAIIYSGRSDSRPQVWPDDQGVHRFLEKYHGRPVLEKTLNQEGLIQQRLLKEKQYLKKLSNENYEEELSQLMINYMGGYADPTMVSENALHLKMLVEQNLKEIDRVMEASGKEDEVYVPAPPMSEEGLLINGENENGQILHHHGMGSGNWNSPSCWNNMENSYGMCLNFVNLGVRLRGKMKMPPRRHTLRSVASDGESSDEASTQPADQHIRGRGRGRGQGVRGRGARVRGGRASQTTRESIPAETENRRPPRRSTLEAAVVGLQGVVEALTGLIAEQRAEDAP 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2705 327 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Sto8g2705 327 SUPERFAMILY SRF-like 3 90 IPR036879 GO:0003677|GO:0046983
Sto8g2705 327 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g2705 327 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g2705 327 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto8g2705 327 MobiDBLite consensus disorder prediction 224 298 - -
Sto8g2705 327 CDD MADS_SRF_like 3 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2705 327 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 158 - -
Sto8g2705 327 PANTHER MADS BOX PROTEIN 4 158 - -
Sto8g2705 327 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Sto8g2705 327 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g2705 327 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2705 Sto-Chr8 19139714 19143727 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2705 1 156 Type I MADS-box Gene Family AT5G48670 35.758 7.67e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2705 SRF-TF 2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2705 - - gmx:100816084 129.413