Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2704 ATGGCTCAACCGGAGGTTCTAAGCTACAAAATTGAGCACACACTTTACCTGAAGCACCTACATCTTCAACAAAGTCAGCAGCCAGTGTTACTAGATCCAAATCAGAAGCAAGAGGTGTGGGGTTATCTAGTTTTCAAGGTTCGACTCAACCAGGGAATAATAGGCATTTTTGCTCTACATGTGGAAAACCTCACTCAGGACAATGCTATAGGGATACTAAAACTTGCTTCAAGTGTGGACAAACAGAAAGTGAAGCTTGAGTACATCACTGATGATCTCAAAAGAAAAGCATCATTCAGGAAAAGGAAGGAGAACGTTGTGAAGAAGACAAATGAACTCAATATCCTTTGTGATGTTGATGCTGCTGCTATTATTTACAGTGGGCTCTCTGCTGATTCACATCCCCAGAGGCTTCACAAGGAGAAAGAACACTTGAAAAAGCGATCTAATGAAAACAAGGAGGAAGAAATATCTCAGCTCATGATCAACTATATGGGTGGGTATGCAGATCCCACCATGGTGTCAGGGAATGCACTTTGTTTGAAGATGTTGGTTGAGCAGAATTTGAAGGAGATTGATAGGGTGATGGAGGCATCTGGGAAAGAGGATGAAGTGCATGTTCCAGCTCCACCAATGTCTGAGGAGGGATTGTTGATCAatggaggaaatgagaatgaccAGATTAATTTGCATCATGGCATGGGATCTGGAAACTGGAATAGCCCATCATGCTGGAATGACATGGAGGATTTGGAATACTATATGGGCTTTGGTTCATCTGAAATGCCGCAAGCTTTTCAAAATGCCAACGACCAGAATGCTTCTTCATCCAGCAACcgttttatccttaaaaaatgA 858 0.4056 MAQPEVLSYKIEHTLYLKHLHLQQSQQPVLLDPNQKQEVWGYLVFKVRLNQGIIGIFALHVENLTQDNAIGILKLASSVDKQKVKLEYITDDLKRKASFRKRKENVVKKTNELNILCDVDAAAIIYSGLSADSHPQRLHKEKEHLKKRSNENKEEEISQLMINYMGGYADPTMVSGNALCLKMLVEQNLKEIDRVMEASGKEDEVHVPAPPMSEEGLLINGGNENDQINLHHGMGSGNWNSPSCWNDMEDLEYYMGFGSSEMPQAFQNANDQNASSSSNRFILKK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2704 285 SMART madsneu2 79 136 IPR002100 GO:0003677|GO:0046983
Sto8g2704 285 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 136 205 - -
Sto8g2704 285 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 82 131 - -
Sto8g2704 285 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 88 127 IPR002100 GO:0003677|GO:0046983
Sto8g2704 285 ProSiteProfiles MADS-box domain profile. 79 127 IPR002100 GO:0003677|GO:0046983
Sto8g2704 285 PRINTS MADS domain signature 81 101 IPR002100 GO:0003677|GO:0046983
Sto8g2704 285 PRINTS MADS domain signature 101 116 IPR002100 GO:0003677|GO:0046983
Sto8g2704 285 PRINTS MADS domain signature 116 137 IPR002100 GO:0003677|GO:0046983
Sto8g2704 285 CDD MADS_SRF_like 81 127 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2704 285 PANTHER MADS BOX PROTEIN 82 131 - -
Sto8g2704 285 PANTHER MADS BOX PROTEIN 136 205 - -
Sto8g2704 285 SUPERFAMILY SRF-like 80 129 IPR036879 GO:0003677|GO:0046983
Sto8g2704 285 Gene3D - 91 166 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2704 Sto-Chr8 19137016 19139051 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2704 81 227 Type I MADS-box Gene Family AT1G65330 28.061 8.72e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2704 SRF-TF 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2704 - - cit:102611884 89.7373