Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2703 ATGGGCAGACAGAAAGTGAAGCTTGAGTACATCACTGATGATCTCAAAAGAAAAGCATCGTTCAGGAAAAGGAAGGAGAACGTCGTAAAGAAGACAAATGAACTTAATATCCTTTGTGATGTTGATGCTGCTGCTATTATTTACAGTGGGCGCTCTGCTGATTCAAATCCCAAGGTTTGGCCAGATGATGGAGGAGTCCATAGGTTTCTTGACAAGTATCATGGTAGGTCAGTGTCGGAGAAGACCTTGAACCAAGAAGGATTGATCCATCAGAGGCTTCACAAGGAGAAAGAACACTTGAAGAAGCGATCTAATGAAAACAAGGAGGAAGAAATATCTCAGCTCATGATCAACTATATGGGTAGGTATGCAGATCCCACCATGGTGTCAGAGAATGCACTTCGTTTGAAGATGTTGGTTGAGCAGAATTTGAAGGAGATTGATAGGGTGATGGAGGCATCTGGGAAAGAGGATGAAGTCCCATCGTGCTGGAATAACATGGAGGATTTGGAATACTATATGGGCTTTGGTTCATCGGAAATGCCGCCAGCTTTTCAAAATGACAACTACCAGAATGCTTCTTCATCCATCAACCcgttttatccttaa 609 0.4204 MGRQKVKLEYITDDLKRKASFRKRKENVVKKTNELNILCDVDAAAIIYSGRSADSNPKVWPDDGGVHRFLDKYHGRSVSEKTLNQEGLIHQRLHKEKEHLKKRSNENKEEEISQLMINYMGRYADPTMVSENALRLKMLVEQNLKEIDRVMEASGKEDEVPSCWNNMEDLEYYMGFGSSEMPPAFQNDNYQNASSSINPFYP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2703 202 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 168 - -
Sto8g2703 202 PANTHER MADS BOX PROTEIN 4 168 - -
Sto8g2703 202 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Sto8g2703 202 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Sto8g2703 202 Coils Coil 90 110 - -
Sto8g2703 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g2703 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g2703 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto8g2703 202 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Sto8g2703 202 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Sto8g2703 202 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2703 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2703 Sto-Chr8 19129266 19129982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2703 1 157 Type I MADS-box Gene Family AT5G48670 36.905 4.75e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2703 SRF-TF 9.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2703 - - pper:18793401 123.25