Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2702 ATGCCGCCGACTTCATGGCAAAGACATAAAGTGAAGCTTGAGTACATCACTGATGATCTCAAAAGGAAAGCATCGTTTAGGAAAAGGAAGGACAACGTTGTAAAGAAGACAAATGAACTCAATATCCTTTGTGATGTTGATGCTGCTGCTATTATTTACAGTGGGCGCTCTGTTGATTCACATCCCCAGGTTTGGCCAGATGATGAAGGAGTCCATAGATTTCTTGACAAGTATCATGGTAGGTCAGTGTCAGAGAAGACCTTGAACCAAGAAGGATTGATCCAGCAGAGGCTTCACAAGGAGAAAGAACACTTGAAGAAGCGATCTAATGAAAACAAGGAGGAAGAAATATCTCAGCTCATGATCAACTATATGGGTGGGTATGCAGATCCCACCATGGTGTCAGAGAATGCACTTCGTTTGAAGATGTTAGTAGAGCAGAATTTGAAGGAGATTGATAGGGTGATGGAGGCATCTGGGAAAGAGGATGAAGTGTATGTTCCAGCTCCACCAATGTCTGAGGAGGGATTGTTGATTAatggaggaaatgagaatgaccAGATTAATCTGCATCATGGCATGGGATCTGGAAATTGGAATAGCCCATCATGCTGCAATAACATGGAGGACTTGGAATACTATATGGGCTTTGGTTCATCTGAAATGCCGCCAGCTTTTCAAAATGACAACTACCAGAATGCTTCTTCATCCAGCAACCcgttttatccttaa 732 0.4085 MPPTSWQRHKVKLEYITDDLKRKASFRKRKDNVVKKTNELNILCDVDAAAIIYSGRSVDSHPQVWPDDEGVHRFLDKYHGRSVSEKTLNQEGLIQQRLHKEKEHLKKRSNENKEEEISQLMINYMGGYADPTMVSENALRLKMLVEQNLKEIDRVMEASGKEDEVYVPAPPMSEEGLLINGGNENDQINLHHGMGSGNWNSPSCCNNMEDLEYYMGFGSSEMPPAFQNDNYQNASSSSNPFYP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2702 243 Coils Coil 95 115 - -
Sto8g2702 243 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Sto8g2702 243 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Sto8g2702 243 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Sto8g2702 243 SMART madsneu2 6 67 IPR002100 GO:0003677|GO:0046983
Sto8g2702 243 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 9 163 - -
Sto8g2702 243 ProSiteProfiles MADS-box domain profile. 6 57 IPR002100 GO:0003677|GO:0046983
Sto8g2702 243 Gene3D - 18 117 IPR036879 GO:0003677|GO:0046983
Sto8g2702 243 SUPERFAMILY SRF-like 8 101 IPR036879 GO:0003677|GO:0046983
Sto8g2702 243 PANTHER MADS BOX PROTEIN 9 163 - -
Sto8g2702 243 CDD MADS_SRF_like 8 89 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2702 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2702 Sto-Chr8 19113709 19115889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2702 8 187 Type I MADS-box Gene Family AT1G65330 33.333 1.42e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2702 SRF-TF 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2702 - - cit:102611884 132.88