Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2699 ATGGGCAGAGAGAAAGTGAAGCTTGAGTACATCACTGATGATCTCAAAAGAAAAGTCTCATTCAGGAAAAGGAAGGAGAACGTCGTAAAGAAGACAAGTGAACTCAATGTCTTTTGTGATGTTGATGCTGCTGCTATTATTTACAGTGGGCGCTCTGATTCACATCCCCAGGTTTGGCCAGATGATCGAGGAGTCCATAGGTTTCTTGACAAGTATCATGGTAGGCCAGTGTTGGAGAAGACCTTGAACCAAGAAGGATTAATCCATCAAAGGCTTCTCAAGGagaaagaatacttgaagaagcGATCTAATGAGAACCACGAGGAAGAAATATCCCAGCTTATGATCAACTATATGGCAGGGCATGCAGATCCCACCATGGTGTCAGAGAATGCACTTCATTTGAAGATGTTGGTTGAGCAGAATTTGAAGGAGATTGATAGGGTGATGGAGGCATCTGGGAAAGAGGATGAAGTAGAGAAAGTGAAGCTTGAGTACATCACTGATGATCTCAAAAGAAAAGTCTCATTCAGGAAAAGGAAGGAGAACATCGTAAAGAAGACAAGTGAACTCAATATCCTTTGCGATGTTGATGCTGCTGCTATTATTTACAGTGGGTGCTCTGATTCACGTCCACAGGTTTGGCCAGATGATGGAGGAGTGCATAGGTTTCTTGAGAAGTATCATGGTAGGCCAGTGTTGGGGAAGACCTTGAACCAAGAAGGCTTAATCCATCAAAGGCTTCTCAAGGagaaagaatacttgaagaagcGATCTAATGAGAACCGCGAGGAAGAAATATCCCAGCTTATGATCAACTATATGGGAGGGTATGCAGATCCCACCATGGTGTCAGAGAATGCACTTCATTTGAAGATGTTGGTTGAGGAGAATTTGAAGGAGATTGATAGGGTGATGGAGGCATCTGGGGAGGCATCTGGGAAAGAGGATGAAGTGTATGTTCCAGCTCCACCAATGTTGGGCGCTCTGCCGATTCACATCCCCAGGTTTGGCCAGATGATGGAGGAGTCCATAGGTTTCTTGACAAGTACATTGAGGCTTCACAAGGAGAAAGAACACTTGAAGAAGCGATCTAATGAAAACAAGGAGGAAGAAATATCTCAGCTGATGATCAACTATATGGGTGGGTATGCAGATCCCACCATGGTGTCAGAGAATGCACTTCGTTTGAAGATGTTGGTTGAGCAGAATTTGAAGGAGATTGATAGGGTGATCGAGGCATCTGGGAAAGAGGATGAAATGTATGTGCCAGCTCCACCAATGTCTGAGGAGGGATTGTTGATCAatggaggaaatgagaatgaccAGATTAATCTGCATCATGGCATAGAATCTGGAAACTGGAATAGCCCATCGTGCTGGAATAACATGGAGGATTTGGAATACTATATGGGCTTTGGTTCATCTGAAATGCCGCTAGCTTTTCAAAATGACAACTACCAGAATGCTTCTTCATCCAGCAACCcgttttatccttaa 1500 0.4193 MGREKVKLEYITDDLKRKVSFRKRKENVVKKTSELNVFCDVDAAAIIYSGRSDSHPQVWPDDRGVHRFLDKYHGRPVLEKTLNQEGLIHQRLLKEKEYLKKRSNENHEEEISQLMINYMAGHADPTMVSENALHLKMLVEQNLKEIDRVMEASGKEDEVEKVKLEYITDDLKRKVSFRKRKENIVKKTSELNILCDVDAAAIIYSGCSDSRPQVWPDDGGVHRFLEKYHGRPVLGKTLNQEGLIHQRLLKEKEYLKKRSNENREEEISQLMINYMGGYADPTMVSENALHLKMLVEENLKEIDRVMEASGEASGKEDEVYVPAPPMLGALPIHIPRFGQMMEESIGFLTSTLRLHKEKEHLKKRSNENKEEEISQLMINYMGGYADPTMVSENALRLKMLVEQNLKEIDRVIEASGKEDEMYVPAPPMSEEGLLINGGNENDQINLHHGIESGNWNSPSCWNNMEDLEYYMGFGSSEMPLAFQNDNYQNASSSSNPFYP 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2699 499 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g2699 499 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g2699 499 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto8g2699 499 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Sto8g2699 499 CDD MADS_SRF_like 161 234 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2699 499 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Sto8g2699 499 Gene3D - 169 266 IPR036879 GO:0003677|GO:0046983
Sto8g2699 499 SUPERFAMILY SRF-like 160 245 IPR036879 GO:0003677|GO:0046983
Sto8g2699 499 PANTHER MADS BOX PROTEIN 4 153 - -
Sto8g2699 499 PANTHER MADS BOX PROTEIN 352 418 - -
Sto8g2699 499 PANTHER MADS BOX PROTEIN 160 311 - -
Sto8g2699 499 ProSiteProfiles MADS-box domain profile. 161 205 IPR002100 GO:0003677|GO:0046983
Sto8g2699 499 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Sto8g2699 499 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 166 205 IPR002100 GO:0003677|GO:0046983
Sto8g2699 499 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g2699 499 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 160 311 - -
Sto8g2699 499 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 352 418 - -
Sto8g2699 499 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 153 - -
Sto8g2699 499 SMART madsneu2 160 217 IPR002100 GO:0003677|GO:0046983
Sto8g2699 499 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g2699 499 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2699 Sto-Chr8 19071617 19082911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2699 160 323 Type I MADS-box Gene Family AT5G48670 35.260 1.23e-21 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2699 SRF-TF 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2699 - - sind:105169408 124.79