Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2698 TTGCAATGGAAGCACTTGTCAAAGGCTGAAGGGCAACATATATTGAAACAAAATCTTGAGTTGCCTAACTCTTCAGCATTCAACATATTCTTATATGCTGAACTCTATATAAAGGATAGATCTCAAGGGATAGTTGCACTCAACAAAAAAATTCCTGATTTCCTTAATCATACATACGCCATGAGTAAAGAGAAAGCCAAGTTCGAGTACATCGTTGATGATCAGAAAAGAAAACTATCGTTCAAGAATAGGGAGAGAGGCATCAAGAAGAAGGCAAAAGAACTCAGTGTTCTTTGTGGTGTTGATGTTGCTGCTATTGCTTACAATGCCCTCTCCGATCCTTATTCCGAGGTCTGGCCAAATGATCTAGGAGTCCATAGGTTTCTTGACAAGTATCATGGAATGCCAGTGTTGGAGAATAATACCTTGAACCAAGAAGAATTAATCCAGAAGAGGCTTCACAAGATgaaagaatacttgaagaagcGATCTAATGAGAACTTCGAGGAAGAAATATCTCAGCTTATGATCAACTATATGGGAGGGTATGCAGATCCTACCATGGTATCAGAGAATGCACTTCATTTGAAGATGTTGGTTGACCAGAATTTGAAGGACATTGATAGGGTGATGGAGGAATCTGGGAAAGAGGATGAAGTGTATGTTCCAGTAGCTCCACCAATGTCTGAGGAGGGATTGTTGATCAAtagaggaaatgagaatggccTGACTCTGCATCATGGCATGGGATCTGAAAACTGGAATGGCCCATCATGCTGGAATAACATGGAGGATTTGGAATACTTTATGGGCTTTGATTCATCTGAAATGCCGCAAGATTTTCAAAATGACAACTACCAGAATGCTTCTTCATCCAACAACCcgttttatccttaa 897 0.3779 LQWKHLSKAEGQHILKQNLELPNSSAFNIFLYAELYIKDRSQGIVALNKKIPDFLNHTYAMSKEKAKFEYIVDDQKRKLSFKNRERGIKKKAKELSVLCGVDVAAIAYNALSDPYSEVWPNDLGVHRFLDKYHGMPVLENNTLNQEELIQKRLHKMKEYLKKRSNENFEEEISQLMINYMGGYADPTMVSENALHLKMLVDQNLKDIDRVMEESGKEDEVYVPVAPPMSEEGLLINRGNENGLTLHHGMGSENWNGPSCWNNMEDLEYFMGFDSSEMPQDFQNDNYQNASSSNNPFYP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2698 298 PANTHER MADS BOX PROTEIN 63 219 - -
Sto8g2698 298 SMART madsneu2 61 121 IPR002100 GO:0003677|GO:0046983
Sto8g2698 298 PRINTS MADS domain signature 63 83 IPR002100 GO:0003677|GO:0046983
Sto8g2698 298 PRINTS MADS domain signature 83 98 IPR002100 GO:0003677|GO:0046983
Sto8g2698 298 PRINTS MADS domain signature 98 119 IPR002100 GO:0003677|GO:0046983
Sto8g2698 298 ProSiteProfiles MADS-box domain profile. 61 121 IPR002100 GO:0003677|GO:0046983
Sto8g2698 298 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 63 219 - -
Sto8g2698 298 MobiDBLite consensus disorder prediction 279 298 - -
Sto8g2698 298 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 70 110 IPR002100 GO:0003677|GO:0046983
Sto8g2698 298 Gene3D - 73 174 IPR036879 GO:0003677|GO:0046983
Sto8g2698 298 SUPERFAMILY SRF-like 61 139 IPR036879 GO:0003677|GO:0046983
Sto8g2698 298 CDD MADS_SRF_like 63 141 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2698 Sto-Chr8 19046205 19049773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2698 61 229 MADS-box Gene Family AT5G26630 31.461 4.02e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2698 SRF-TF 2.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2698 - - gmx:100816084 134.035