Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2695 ATGGCTACTATGGAAAGTGGAAACCCACATTATGAATTTTTAGAGAAAGTGAAGCTTGAGTACATCACTGATGATCTCAAAAGAAAAGTATCGTTCAGGAAAAGGAAGGAGAACGTCGTGAAGAAGACAAGTGAACTCAATATCCTCTGTGATGTTGATGCTGCTGCTATTATTTACAGTGGCCGCTCTGATTCACATCCCCAGGTTTGGCCAGATGATCGAGGAGTCCATAGGTTTCTTGAGAAGTATCATGGTAGGCCAGTGTTGGAGAAGACCTTGAACCGGGAAGGATTAATCCAGCAGAGGCTTCACAAGGagaaagaatacttgaagaagcGATCTAATGAGAACAACAAGGAAGAAATATCTCAGCTCATGATCAACTATATGTGTGGGTATGCAGATCCTACCATGGTGTCAGAGAATGCACTTCAATTGAAGATGTTGGTTGAGCAGAATCTGAAGGAGATTGATAGGGTGATGGAGGCATCTAGAAAAGAGGATGATGAAGTGTATGTTCCAGCTCCACCAATGTCTGAGGAGGGATTGTTGATCAatggagagaatgagaatggccAGACTCTGCATCATCATGGCATGGGATCTGATGGAAACTGGAATAGCCCATCATGCTGGAATAACATGGAGAATTCAGAATACTATATGGGTTTTGGTTCatctaaaatttttcaaaatgcgaACTACCAgaatgcttcttcttcttcttcttcttcttcttcttcttccaattaCAACCcgttttatccttaa 771 0.3606 MATMESGNPHYEFLEKVKLEYITDDLKRKVSFRKRKENVVKKTSELNILCDVDAAAIIYSGRSDSHPQVWPDDRGVHRFLEKYHGRPVLEKTLNREGLIQQRLHKEKEYLKKRSNENNKEEISQLMINYMCGYADPTMVSENALQLKMLVEQNLKEIDRVMEASRKEDDEVYVPAPPMSEEGLLINGENENGQTLHHHGMGSDGNWNSPSCWNNMENSEYYMGFGSSKIFQNANYQNASSSSSSSSSSSNYNPFYP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2695 256 ProSiteProfiles MADS-box domain profile. 16 72 IPR002100 GO:0003677|GO:0046983
Sto8g2695 256 PANTHER MADS BOX PROTEIN 15 164 - -
Sto8g2695 256 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 15 164 - -
Sto8g2695 256 CDD MADS_SRF_like 16 95 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2695 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 60 IPR002100 GO:0003677|GO:0046983
Sto8g2695 256 SMART madsneu2 15 72 IPR002100 GO:0003677|GO:0046983
Sto8g2695 256 SUPERFAMILY SRF-like 15 105 IPR036879 GO:0003677|GO:0046983
Sto8g2695 256 Gene3D - 24 125 IPR036879 GO:0003677|GO:0046983
Sto8g2695 256 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Sto8g2695 256 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Sto8g2695 256 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Sto8g2695 256 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2695 Sto-Chr8 19028270 19029149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2695 15 171 Type I MADS-box Gene Family AT5G48670 34.969 8.67e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2695 SRF-TF 2.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2695 - - gmx:100816084 125.946