Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2694 TTGGCACATGTGTTCGGAGAAGCAAACCATGCCGCCGACTTCATTGCAAAGCTTAGTCATACCCTCCCTGATGGTTTGCATGTTTTTGACAGGCCTCAAGCGGGTTTAGGCAATATTTTTGCTAATGATCTTTATGGTCCTTTGGTGCCTCACCTACAGAAAGTGAAGCTTGAGTACATTACTGATGATCTCAAAAGAAAAGCATCGTTCAGGAAAAGGAAGGAGAACGTCGTGAAGAAGACAAATGAACTCAATATCCTCTGTGATGTTGATGCTGCTGCTATTATTTACAGTGGGCGCTCTGCTGATTCACATCCCCAGGTTTGGCCAGATGATGGAGGAGTCCATAGGTTTCTTGACAAGTATCATGGTAGGTCAGTGTTGGAGAAGACCTTGAACCAAGAAGGATTGATTCAGCAGAGGCTTCACAAGGAGAAAGAACACTTGAAGAAGCGATCCAATGAAAACAAGGAGGAAGAAATATCTCAGCTCATGATCAACTATATGGGTGGGCATGCAGATCCCACCATGGTGTCAGAGAATGCACTTCGTTTGAAGATGTTGGTTGAGAAAAATTTGAAGGAGATTGATAGGGTGATGGAGGCAACTGGGAAAGAGGATGATGAAGTGTATGTTCCAGCTCCACCAATAATGTCTGAGGAGGGATTGTTGATCAAtcgagagaatgagaatgagcaGATTAATCTGCATCATCATGGCATGGGATCTGGAAACTGGAATAGCCCATCATCATGCTGGAATAACTTGGAGGATTTGGAATACTATATGGGATTTGGTTCATCTGAAATGCCCCAAGATTTTCAAAATGCCAACTTCCAGAATGCTGCTTCTTCATCCAGCAACCcgttttatccttaa 879 0.4187 LAHVFGEANHAADFIAKLSHTLPDGLHVFDRPQAGLGNIFANDLYGPLVPHLQKVKLEYITDDLKRKASFRKRKENVVKKTNELNILCDVDAAAIIYSGRSADSHPQVWPDDGGVHRFLDKYHGRSVLEKTLNQEGLIQQRLHKEKEHLKKRSNENKEEEISQLMINYMGGHADPTMVSENALRLKMLVEKNLKEIDRVMEATGKEDDEVYVPAPPIMSEEGLLINRENENEQINLHHHGMGSGNWNSPSSCWNNLEDLEYYMGFGSSEMPQDFQNANFQNAASSSSNPFYP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2694 292 ProSiteProfiles MADS-box domain profile. 54 101 IPR002100 GO:0003677|GO:0046983
Sto8g2694 292 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 59 98 IPR002100 GO:0003677|GO:0046983
Sto8g2694 292 PANTHER MADS BOX PROTEIN 53 203 - -
Sto8g2694 292 SUPERFAMILY SRF-like 53 145 IPR036879 GO:0003677|GO:0046983
Sto8g2694 292 CDD MADS_SRF_like 53 133 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2694 292 PRINTS MADS domain signature 72 87 IPR002100 GO:0003677|GO:0046983
Sto8g2694 292 PRINTS MADS domain signature 52 72 IPR002100 GO:0003677|GO:0046983
Sto8g2694 292 PRINTS MADS domain signature 87 108 IPR002100 GO:0003677|GO:0046983
Sto8g2694 292 SMART madsneu2 50 111 IPR002100 GO:0003677|GO:0046983
Sto8g2694 292 Gene3D - 62 163 IPR036879 GO:0003677|GO:0046983
Sto8g2694 292 Coils Coil 139 159 - -
Sto8g2694 292 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 53 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2694 Sto-Chr8 19018844 19020098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2694 54 233 Type I MADS-box Gene Family AT1G65330 32.653 1.97e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2694 SRF-TF 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2694 - - csin:114307518 128.257