Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2691 ATGAGTAGAGAGAAAGCCAAGTTCGAGTACATCGCTGATGATCAGAAAAGAAAACTATCGTTCAAGAAAAGGGAGAGAGGCATCAAGAAGAAGGCCAAAGAACTCAGTGTTCTTTGTGGTGTTGATGCCGTTGCCATTGCTTACAATGACCTCTCCGATCCTCATTCTGAGGTCTGGCCAGATGATGGAGGAGTCCATGGGTTTCTTGACAAGTATCATGGTATGCCAATCTTAGAGAATACCTTGAACGAAGAAGAACTAATCCAGAAGAGGCTTCACAAGGTGCAAGAATACTTGAAGAAGAAATCTAATGAGAACTTCGAGGAAGAGATATCTCAGCTCATGATCAACTATATGGGTGGGTATGCAGATCCCACTGTGGTGTCAGAGAATGCACTTCATCTGAAGATGTTGGTTGAGCAGCACTTGAAGGAGATCGATAGGGTGATGGAGGAATCTGGGAAAGAGGAGGGTGAAGTGTTTGTTCCAGTAGCTCCACCAATGTCTGAGGAGGGATCGTTGATGAacagagggaatgagaatggccAGACTCTGCATCATCATGGTGGCATGGGATCTGGAAACTGGAATAGCCCATCATCATGCTGGAATGACTTGGAGGATTTGGAATAG 633 0.4344 MSREKAKFEYIADDQKRKLSFKKRERGIKKKAKELSVLCGVDAVAIAYNDLSDPHSEVWPDDGGVHGFLDKYHGMPILENTLNEEELIQKRLHKVQEYLKKKSNENFEEEISQLMINYMGGYADPTVVSENALHLKMLVEQHLKEIDRVMEESGKEEGEVFVPVAPPMSEEGSLMNRGNENGQTLHHHGGMGSGNWNSPSSCWNDLEDLE 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2691 210 MobiDBLite consensus disorder prediction 166 210 - -
Sto8g2691 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g2691 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g2691 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Sto8g2691 210 SUPERFAMILY SRF-like 1 84 IPR036879 GO:0003677|GO:0046983
Sto8g2691 210 CDD MADS_SRF_like 3 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2691 210 MobiDBLite consensus disorder prediction 174 204 - -
Sto8g2691 210 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 154 - -
Sto8g2691 210 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Sto8g2691 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g2691 210 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g2691 210 PANTHER MADS BOX PROTEIN 3 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2691 Sto-Chr8 19002000 19002632 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2691 3 183 Type I MADS-box Gene Family AT1G65330 30.500 1.19e-21 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2691 SRF-TF 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2691 - - adu:107480964 118.627