Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2690 ATGGGTAGAAAGAAAGTGACGTTCGAGTACATCACTGATgatcagaaaagaaaattgtCGTTCAAGAAGAGGCAGGAAGGCCTCAAGAAGAAGGCAAGAGAGCTCAGTATTCTTTGTGGTGTTGATGTTGTTTCCATTGTTTTCAATGCCCTCTCCGATCCTCATTCCGAGGTTTCACCGGACGATCGAGGAGTCCACAGGTTCCTGGAGAAGTATCATGGCAGCCCAATCTTGGAGAAGACCCTGAACCAAGAAGGATTAATCCGGGAGAGGCTGAACAAGATgaaagaatacttgaagaagcGATCCAATGAGAACGACGAGGAAGAGATATCTCAGCTCATGATCAACTATATGAGTGGGTGTGCAGATCCCACAATGGTGTCAGAGAATGCACTTCGTTTGAAGATGTTGGTTGTGCAGAACTTGAAGGAGATCGATAGGGTGATGGAGGAATCTGGGAAAGAGGATGATGAAGTGTATGTTCCAGCTCCTCCACCAATGTCTGAGGAGGGATTGCTGATCAatggagagaatgagaatggccAGACTCTGCATCATCATGGCATGGGATCTGATGGAAACTGGAATAGCCCATTATCATGTTGGAATGACATGGAGGATTTGGAATACTTTATGGAATTTGGTTCATCTGAAATAATGCCGAAAGATTTTGATCAAAATGACAACTACCAGAATAATGCTGCTTCTTCATCCAACAACCcgttttatccttaa 738 0.4038 MGRKKVTFEYITDDQKRKLSFKKRQEGLKKKARELSILCGVDVVSIVFNALSDPHSEVSPDDRGVHRFLEKYHGSPILEKTLNQEGLIRERLNKMKEYLKKRSNENDEEEISQLMINYMSGCADPTMVSENALRLKMLVVQNLKEIDRVMEESGKEDDEVYVPAPPPMSEEGLLINGENENGQTLHHHGMGSDGNWNSPLSCWNDMEDLEYFMEFGSSEIMPKDFDQNDNYQNNAASSSNNPFYP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2690 245 MobiDBLite consensus disorder prediction 222 245 - -
Sto8g2690 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g2690 245 MobiDBLite consensus disorder prediction 223 245 - -
Sto8g2690 245 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 153 - -
Sto8g2690 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Sto8g2690 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto8g2690 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g2690 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g2690 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto8g2690 245 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Sto8g2690 245 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Sto8g2690 245 PANTHER MADS BOX PROTEIN 3 153 - -
Sto8g2690 245 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2690 Sto-Chr8 18999657 19000394 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2690 3 183 Type I MADS-box Gene Family AT1G65330 28.500 1.90e-18 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2690 SRF-TF 4.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2690 - - ini:109164713 115.161