LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g2685	ATGAGTAGAGAGAAAGCCCAGTTCGAGTACGTCGCTGATGATCAGAAAAGAAAACTATCGTTCAACAAAAGGCAGAGAGGCATCAAGAAGAAGGCCAAAGAACTCAGTGTTCTTTGTGGTGTTGATGTCGTTGTCATTGCTTACAATGACCTCTCCGATCCTCATTCTGAGGTCTGGGCAAATGATGGAGGAGTCCATGGGTTTCTTGACAAGTATCATGGTATGCCAGTCTTAGAGAATACCTTGAAACAAGAAGAACTAATCCAGAAAAGGCTTCACAAGATGCACGAATACTTGAAGAAGAAATCTAATGAGAACTTCGAGGAAGAGATATCTCAGCTCATGATCAACTATATGGGTGGGTATGCAGATCCCACCGTGGTGTCAGAGAATGCACTTCATCTGAAGATGTTGGTTGAGCAGCACTTGAAGGAGATCGATAGGGTGATGGAGGAATCTGGGAAAGAGGAGGGTGAAGTGTTTGTTCCAGTAGCTCCACCAATGTCTGAGGAGGGATCGTTGATGAACGGAGTAAAGATGCCACCTCGAAGACGTACACTTCGTAGTGTGGCAAGTGATGGTGAGAATTCTGATGAGGCTTCTACTCAGCCTGCTGACCAACACGTaagaggtcgaggtagaggccaaGGAGtgcgaggccgaggtagaggccgaaGAGCACGGTTGAGGGGTGGTAGAGCCTCTCAAACCACTAGAGAGAGCATTCCTGCAAAAACAGAAAACCGTCACCCACCACGGCGTTCAGCACTTGAAGCAGCGGTTGTAACACCAGAGGTTACGCCAAACCAACCAGAGCCATCAGTGCAACCAGTACAGGATGAGGAGGATGGTTCTTTCTCGAAGAAGCGCAAGTGGGGTAATGAAGGGAAATCCTTAGTACAAGACGGCTCAACCAGAGGTTCTAAGCTACAAAATCGAGCACACACTCTTCCTGAAGCACCTACATCTTCAACAAAGTCAGCAGCCAGTGTTACTAGATCTAAATCAGAGGCAAGAGGGATACTAAAACTTGCTTCAAGTGTGGACAAGTGGGTCATATAA	1062	0.4454	MSREKAQFEYVADDQKRKLSFNKRQRGIKKKAKELSVLCGVDVVVIAYNDLSDPHSEVWANDGGVHGFLDKYHGMPVLENTLKQEELIQKRLHKMHEYLKKKSNENFEEEISQLMINYMGGYADPTVVSENALHLKMLVEQHLKEIDRVMEESGKEEGEVFVPVAPPMSEEGSLMNGVKMPPRRRTLRSVASDGENSDEASTQPADQHVRGRGRGQGVRGRGRGRRARLRGGRASQTTRESIPAKTENRHPPRRSALEAAVVTPEVTPNQPEPSVQPVQDEEDGSFSKKRKWGNEGKSLVQDGSTRGSKLQNRAHTLPEAPTSSTKSAASVTRSKSEARGILKLASSVDKWVI	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g2685	353	MobiDBLite	consensus disorder prediction	282	296	-	-
	Sto8g2685	353	MobiDBLite	consensus disorder prediction	298	334	-	-
	Sto8g2685	353	SMART	madsneu2	1	57	IPR002100	GO:0003677\|GO:0046983
	Sto8g2685	353	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	247	-	-
	Sto8g2685	353	ProSiteProfiles	MADS-box domain profile.	1	50	IPR002100	GO:0003677\|GO:0046983
	Sto8g2685	353	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Sto8g2685	353	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Sto8g2685	353	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Sto8g2685	353	SUPERFAMILY	SRF-like	1	84	IPR036879	GO:0003677\|GO:0046983
	Sto8g2685	353	MobiDBLite	consensus disorder prediction	214	232	-	-
	Sto8g2685	353	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	11	50	IPR002100	GO:0003677\|GO:0046983
	Sto8g2685	353	Gene3D	-	13	113	IPR036879	GO:0003677\|GO:0046983
	Sto8g2685	353	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL80	1	247	-	-
	Sto8g2685	353	MobiDBLite	consensus disorder prediction	166	340	-	-
	Sto8g2685	353	CDD	MADS_SRF_like	9	83	IPR033897	GO:0000981\|GO:0000987\|GO:0045944

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g2685	Sto-Chr8	18965228	18967692	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g2685	1	180	MADS-box Gene Family	AT5G26630	30.645	1.05e-16	76.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Sto8g2685		SRF-TF	2.5e-14	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g2685	-		-	ini:109164713	98.5969