Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2683 ATGAGTAGAGAGAAAGCCAAGTTCGAGTACATCGCTGATGATCAGAAAAGAAAACTATCGTtcaagcaaagggagagaggcATCAAGAAGAAGGCCAAAGAACTCAGTGTTCTTTGTGGTGTTGATGCCATTGCCATTGCTTACAATGACCTCTCTGATCCTCATTCCGAGGTCTGGCCAGATGATGGAGGAGTCCATGGGTTTCTTGACAAGTATCATGGTATGCCAATCTTAGAGAATACCTTGAACGAAGAAGAACTAATCCAGAAGAGGCTTCACAAGGTGCAAGAATACTTGAAGAAGAAATCTAATGAGAACTTCGAGGAAGAGATATCTCAGCTCATGATCAACTATATGGGTGGGTATGCAGATCCCACCGTGGTGTCAGAGAATGCACTTCATCTGAAGATGTTGGTTGAGCAGCACTTGAAGGAGATCGATAGGGTGATGGAGGAATCTGGGAAAGAGGAGGGTGAAGTTTTTGTTCCAGTAGCTCCACCAATGTCTGAGGAGGGATCGTTGATGAacagagggaatgagaatggccAGACTCTGCATCATCATGGTGGCATGGGATCTGGAAACTGGAATAGCCCATCATCATGCTGGAATGACTTGGAGGATTTGGAATACTATATGGGATTTGGTTCATCTGAAATAATGCCGCAACATTTTCAAAATGCCAACAACCAGAATAATGCTTCTTCTTCCAACAACCcCGTAGAATTAGAATCCAAAGTGGAATTGCACGGAATACGAGGAATTCTTCAGTTTGGTTCGTCCATGTGgagttggaattggaatccaaggAATTGA 816 0.3983 MSREKAKFEYIADDQKRKLSFKQRERGIKKKAKELSVLCGVDAIAIAYNDLSDPHSEVWPDDGGVHGFLDKYHGMPILENTLNEEELIQKRLHKVQEYLKKKSNENFEEEISQLMINYMGGYADPTVVSENALHLKMLVEQHLKEIDRVMEESGKEEGEVFVPVAPPMSEEGSLMNRGNENGQTLHHHGGMGSGNWNSPSSCWNDLEDLEYYMGFGSSEIMPQHFQNANNQNNASSSNNPVELESKVELHGIRGILQFGSSMWSWNWNPRN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2683 271 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Sto8g2683 271 SUPERFAMILY SRF-like 1 84 IPR036879 GO:0003677|GO:0046983
Sto8g2683 271 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g2683 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Sto8g2683 271 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 227 - -
Sto8g2683 271 CDD MADS_SRF_like 3 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2683 271 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 227 - -
Sto8g2683 271 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2683 Sto-Chr8 18940743 18943880 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2683 1 159 Type I MADS-box Gene Family AT5G48670 32.738 1.70e-20 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2683 SRF-TF 9.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2683 - - adu:107480964 121.709