Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2681 ATGAGTAGAGAGAAAGCCAAGTTCGAGTACATCGCTGATGATCAGAAAAGAAAACTATCGTtcaagcaaagggagagaggcATCAAGAAGAAGGCCAAAGAACTCAGTGTTCTTTGTGGTGTTGATGCCATTGCCATTGCTTACAATGACCTCTCTGATCCTCATTCCGAGGTCTGGCCAGATGATGGAGGAGTCCATGGGTTTCTTGACAAGTATCATGGTATGCCAATCTTAGAGAATACCTTGAACGAAGAAGAACTAATCCAGAAGAGGCTTCACAAGGTGCAAGAATACTTGAAGAAGAAATCTAATGAGAACTTCGAGGAAGAGATATCTCAGCTCATGATCAACTATATGGGTGGGTATGCAGATCCCACCGTGGTGTCAGAGAATGCACTTCATCTGAAGATGTTGGTTGAGCAGCACTTGAAGGAGATCGATAGGGTGATGGAGGAATCTGGGAAAGAGGAGGGTGAAGTTTTTGTTCCAGTAGCTCCACCAATGTCTGAGGAGGGATCGTTGATGAacagagggaatgagaatggccAGACTCTGCATCATCATGGTGGCATGGGATCTGGAAACTGGAATAGCCCATCATCATGCTGGAATGACTTGGAGGATTTGGAATACTATATGGGATTTGGAAAATTTGGAGCAGTTTTTGCCTCTATTCCACCCCCCATTATTGCTTCTCTGTACTGCTTGTTCTTTGCCTATGTTGGTGCTGGAGGTCTCAGTTTTCTTCAATTCTGCAACCTCAACAGTTTTAGAACAAAGTTCATCCTAGGCTTCTCCGTCTTCCTGGGGCTGTCTATACCACAGTACTTCAACGAGTACACAACAATCAATGGTTTTGGTCCAGTCCACACAAATGCAAGATGGGGTGTCTGTCGCCTTATGAATAGAATGGTAGCATCATGCTTAAGttccattttcaattttcatcttaaaTTTGACACTGAACCTAAAAGCCCTAAACAAACCAAATCCAACTATGGAGAAGAGGAACACAACTCACCTCCGAGAATAGGAAACAAAGCAGAGAGAACAGAGCAGAGGTGGAGGAGTGGCGAGGAGACGACTGATGACGGTGGTTGCCGGAAGCTAAGGGATGAAGCCGCTGCCGCTGCCGCTGCCGCGAAGGAAGAGAGTGACGAAGAGAGTGACGAGGAGGAGATAAtggtttCACCGGACGATCGAGGAGTCCACAGGTTCCTGGAGAAGTATCATGGCAGCCCAATCTTGGAGAAGACCCTAAACCAAGAAGGATTAATCCGGGAGAGGCTGAACAAGATgaaagaatacttgaagaagcGGTCCAATGAGAATGACGAGGAAGAGATATCTCAGCTCATGAGTGGGTGTGCAGATCCCACAATGGTGTCAGAGAATGCACTTCGTTTGAAGATGTTGGTTGTGCAGAACTTGAAGGAGATCGATAGGGTGATGGAGGAATCTGGGAAAGTGGATGATGAAGTGTATGTTCCAGCTCCTCCACCAATGTCTGAGGAGGGATTGCTGATCAatggagagaatgagaatggccAGACTCTGCATCATCATGGCATGGGATCTGATGGAAACTGGAATAGCCCATTATCATGTTGGAATGACATGGAGGATTTGGAATACTTTATGGAATTTGGTTCATCTGAAATAATGCCGAAAGATTTTGATCAAAATGACAACTACCAGAATAATGCTGCTTCTTCATCCAACAACCCGTtttatccataa 1740 0.4241 MSREKAKFEYIADDQKRKLSFKQRERGIKKKAKELSVLCGVDAIAIAYNDLSDPHSEVWPDDGGVHGFLDKYHGMPILENTLNEEELIQKRLHKVQEYLKKKSNENFEEEISQLMINYMGGYADPTVVSENALHLKMLVEQHLKEIDRVMEESGKEEGEVFVPVAPPMSEEGSLMNRGNENGQTLHHHGGMGSGNWNSPSSCWNDLEDLEYYMGFGKFGAVFASIPPPIIASLYCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSVFLGLSIPQYFNEYTTINGFGPVHTNARWGVCRLMNRMVASCLSSIFNFHLKFDTEPKSPKQTKSNYGEEEHNSPPRIGNKAERTEQRWRSGEETTDDGGCRKLRDEAAAAAAAAKEESDEESDEEEIMVSPDDRGVHRFLEKYHGSPILEKTLNQEGLIRERLNKMKEYLKKRSNENDEEEISQLMSGCADPTMVSENALRLKMLVVQNLKEIDRVMEESGKVDDEVYVPAPPPMSEEGLLINGENENGQTLHHHGMGSDGNWNSPLSCWNDMEDLEYFMEFGSSEIMPKDFDQNDNYQNNAASSSNNPFYP 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2681 579 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Sto8g2681 579 PANTHER NUCLEOBASE-ASCORBATE TRANSPORTER 6 212 307 - -
Sto8g2681 579 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g2681 579 MobiDBLite consensus disorder prediction 557 579 - -
Sto8g2681 579 MobiDBLite consensus disorder prediction 323 396 - -
Sto8g2681 579 SUPERFAMILY SRF-like 1 84 IPR036879 GO:0003677|GO:0046983
Sto8g2681 579 Pfam Permease family 215 277 IPR006043 GO:0016020|GO:0022857|GO:0055085
Sto8g2681 579 Coils Coil 367 391 - -
Sto8g2681 579 MobiDBLite consensus disorder prediction 323 383 - -
Sto8g2681 579 CDD MADS_SRF_like 3 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2681 579 PANTHER XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER 212 307 - -
Sto8g2681 579 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Sto8g2681 579 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2681 Sto-Chr8 18920683 18934898 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2681 209 299 Organic Solute Cotransporters AT5G62890 84.615 7.14e-46 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2681 Xan_ur_permease 5.2e-09 CL0062
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2681 - - lang:109338821 164.466