Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2678 ATGAGTAGAGAGAAAGCCCAGTTCGAGTACGTCGCTGATGATCAGAAAAGAAAACTATCGTTCAACAAAAGGCAGAGAGGCATCAAGAAGAAGGCCAAAGAACTCAGTGTTCTTTGTGGTGTTGATGTCGTTGTCATTGCTTACAATGACCTCTCCGATCCTCATTCTGAGGTCTGGGCAGATGATGGAGGAGTCCATGGGTTTCTTGACAAGTATCATGGTATGCCAGTCTTAGAGAATACCTTGAACCAAGAAGAACTAATCCAGAAAAGGCTTCACAAGATGCACGAATACTTGAAGAAGAAATCTAATGAGAACTTCGAGGAAGAGATATCTCAGCTCATGATCAACTATATGGGTGGGTATGCAGATCCCACCGTGGTGTCAGAGAATGCACTTCATCTGAAGATGTTGGTTGAGCAGCACTTGAAGGAGATCGATAGGGTGATGGAGGAATCTGGGAAAGAGGAGGGTGAAGTGTTTGTTCCAGTAGCTCCACCAATGTCTGAGGAGGGATCGTTGATGAACGGAGGTAATGAGAATGGCCAGACTCTGCATCATCATGGTGGCATGGGATCTGGAAACTGGAATAGCCCATCATCATGCTGGAATGACTTGGAGGATTTGGAATACTACATGGGATTTGGTTCATCTGAAATAATGCCGCAAGATTTTCAAAATGCCAACAACCAGAATAatggttcttcttcttccaacaaCCCGttttatacttaa 735 0.4272 MSREKAQFEYVADDQKRKLSFNKRQRGIKKKAKELSVLCGVDVVVIAYNDLSDPHSEVWADDGGVHGFLDKYHGMPVLENTLNQEELIQKRLHKMHEYLKKKSNENFEEEISQLMINYMGGYADPTVVSENALHLKMLVEQHLKEIDRVMEESGKEEGEVFVPVAPPMSEEGSLMNGGNENGQTLHHHGGMGSGNWNSPSSCWNDLEDLEYYMGFGSSEIMPQDFQNANNQNNGSSSSNNPFYT 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2678 244 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Sto8g2678 244 SMART madsneu2 1 57 IPR002100 GO:0003677|GO:0046983
Sto8g2678 244 MobiDBLite consensus disorder prediction 223 244 - -
Sto8g2678 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g2678 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g2678 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto8g2678 244 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Sto8g2678 244 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Sto8g2678 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 218 - -
Sto8g2678 244 CDD MADS_SRF_like 9 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2678 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Sto8g2678 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2678 Sto-Chr8 18900562 18901296 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2678 3 183 Type I MADS-box Gene Family AT1G65330 29.000 4.30e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2678 SRF-TF 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2678 - - ini:109164713 104.76