Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2677 ATGGGCAGACAGAAAGTGAAGCTTGAGTACATCACTGATGATCTCAAAAGGAAAGCATCGTTCAGGAAAAGGAAGGAGAACGTCGTGAAGAAGACAAATGAACTCAATATCCTTTGTGATGTTGATGCTACTGCTATTATTTACAGTGGGCACTCTGCTGATTCACATCCCCAGGTTTGGCCAGATGATGGAGGAGTCCATAGGTTTCTTAACAAGTATCATGGTAGGTCAGTGTTGGAGAAGACCTTGAACCAAGAAGGATTGATCCAGCAGAGGCTTCACAAGGAGAGAGAACACTTGAAGAAGCGATCCAATGAAAACAAGGATGAAGAAATATCTCAGCTCATGATCAACTATATGGGTGGGCTGATGGAGGCATCTGGGAAAGAGGATGATGAAGTGTATGTTCCAGCTCCACCAATGTCTGAGGAGGGGTTGCTGCTCAatggaggaaatgagaatgaccAAATTAATCTGCATCATCATGGCATGGGATCTAGAAACTGGAATAGCCCATCATCATGCTGGAATAACTTGGAGGATTTGGAATACTATATATGGGCTTTGGTTCATCTGAAATGCCGCAAGCTTTTCAAAATGCCAACTTCCAAAATGTTGCTTCTTCATCCAGCAACCCGTTTTATCCTTAAAAATTGA 657 0.414 MGRQKVKLEYITDDLKRKASFRKRKENVVKKTNELNILCDVDATAIIYSGHSADSHPQVWPDDGGVHRFLNKYHGRSVLEKTLNQEGLIQQRLHKEREHLKKRSNENKDEEISQLMINYMGGLMEASGKEDDEVYVPAPPMSEEGLLLNGGNENDQINLHHHGMGSRNWNSPSSCWNNLEDLEYYIWALVHLKCRKLFKMPTSKMLLLHPATRFILKN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2677 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Sto8g2677 218 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Sto8g2677 218 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sto8g2677 218 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Sto8g2677 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g2677 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g2677 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto8g2677 218 PANTHER MADS BOX PROTEIN 4 124 - -
Sto8g2677 218 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 124 - -
Sto8g2677 218 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Sto8g2677 218 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2677 Sto-Chr8 18895455 18896184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2677 3 127 Type I MADS-box Gene Family AT1G65330 39.844 1.22e-23 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2677 SRF-TF 5.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2677 - - fve:101296696 115.161