Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2674 atGGGTAGAAAGAAAGTGACGTTCGAGTACATCACTGATgatcagaaaagaaaattgtCGTTCAAGAAGAGGCAGGAAGGCCTCAAGAAGAAGGCAAGAGAGCTTAGTATTCTTTGTGGTGTTGATGTTGTTTCCATTGTTTTCAATGCCCTCTCCGATCCTCATTCCGAGGTTTCACCGGACGATCGAGGAGTCCACAGGTTCCTGGAGAAGTATCATGGCAGCCCAATCTTGGAGAAGACCCAAAACCAAGAAGGATTAATCCGGGAAAGGCTGAACAAGATgaaagaatacttgaagaagcGGTCCAATGAGAATGACGAGGAAGAGATATCTCAGCTCATGAGTGGGTGTGCAGATCCCACAATGGTGTCAGAGAATGCACTTCGTTTGAAGATGTTGGTTGTGCAGAACTTGAAGGAGATCGATAGGGTGATGGAGGAATCTGGAAAAGTGGATGATGAAGTGTATGTTCTAGCTCCTCCACCAATGTCTGAGGAGGGATTGCTGATCAatggagagaatgagaatggccAGACTCTGCATCATCATGGCATGGGATCTAATGGAAACTGGAATAGCCCATTATCATATTCTTATTGTCAGTCTTTGTCTTAA 618 0.4094 MGRKKVTFEYITDDQKRKLSFKKRQEGLKKKARELSILCGVDVVSIVFNALSDPHSEVSPDDRGVHRFLEKYHGSPILEKTQNQEGLIRERLNKMKEYLKKRSNENDEEEISQLMSGCADPTMVSENALRLKMLVVQNLKEIDRVMEESGKVDDEVYVLAPPPMSEEGLLINGENENGQTLHHHGMGSNGNWNSPLSYSYCQSLS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2674 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g2674 205 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Sto8g2674 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Sto8g2674 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g2674 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g2674 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto8g2674 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto8g2674 205 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Sto8g2674 205 PANTHER MADS BOX PROTEIN 3 148 - -
Sto8g2674 205 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2674 205 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2674 Sto-Chr8 18873488 18885701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2674 1 147 Type I MADS-box Gene Family AT5G48670 34.194 1.41e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2674 SRF-TF 3.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2674 - - ini:109164713 102.449