Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2671 ATGGGTAGAAAGAAAGTGACGTTTGAGTACATCACTGATtatcagaaaagaaaattatcgtTCAAGAAGAGGCAGGAAGGCCTCAAGAAGAAGCCAAGAGAACTCAGTATTCTCTGTGGTGTTGATGTTGTTGCCGTTGTTTACAATGCCCTCTCTGATCCTCATTCCGAGGTTTCTCCGGACGATCGAGGAGTCCATAGGTTTCTGGATAAGTATCATGATCCCACCATTGTCTCAGAGAATGCCCTTCGTTTGAAGATGTTGGTTGAGCAGAATTTGAAGGAGATTGATAGGGTGATGGAGGCATCTGGGAAAGAGGATGAAGTCCCATCATGTTGGAATGGCATGGAGGATTTGGAATACTATTTGGGATTTGGTTCATCTGAAATGCCGCAAGATTTTGATCAAAATGACAACTACCAGAATGCTGCTTCTTCATCCAACAGCCCGTTTTATAAAAATGATGTTTGTGGTTTATTCTAA 483 0.4079 MGRKKVTFEYITDYQKRKLSFKKRQEGLKKKPRELSILCGVDVVAVVYNALSDPHSEVSPDDRGVHRFLDKYHDPTIVSENALRLKMLVEQNLKEIDRVMEASGKEDEVPSCWNGMEDLEYYLGFGSSEMPQDFDQNDNYQNAASSSNSPFYKNDVCGLF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2671 160 PANTHER MADS BOX PROTEIN 3 77 - -
Sto8g2671 160 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 77 - -
Sto8g2671 160 CDD MADS_SRF_like 2 75 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2671 160 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g2671 160 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g2671 160 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto8g2671 160 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Sto8g2671 160 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Sto8g2671 160 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g2671 160 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto8g2671 160 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2671 Sto-Chr8 18857280 18861030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2671 1 106 Type I MADS-box Gene Family AT3G05860 34.862 6.08e-13 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2671 SRF-TF 5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2671 - - peq:110020407 68.5514