Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2670 ATGGCAATGGAAGCACTTCTCAAAGGCTTAAGAGCAGCATATATTGAAACTGTACTAAAGTTTCAGTTGCACATATTGAGAACAATGGGTACTAGAGAGAAAGTGAAGCCTGAGTACATCACTGATGATGATAAAAGAAAAGTATCGTTCAAGAAAAGGGAGGGAGGCTTCATGAAGAAGGCAAAAAAAGAACCCAGTATTCTTTGTGGTGTTCATGAAGAAGAAGGCTTCATGAAGAAGTGGTCTTATGAAGACTACGAGGAAGAAATATCTCGGCTCACCATTAACTACATGGGTAGGTATGCAGATCCTACCATGGTGTCAGATAATGCATTTCATTTGATGATGAGAGTTGACCAGAATCTGATGGAGATGGATAGGGTGATGGAGATTAATCCAATTAGTGAGAGTATAGCTGAAGAGAAAACTTTGAGAGAGCATGCTGCTCCACAGGTTAATCAAGCTCCGTTGTGTATTGCTACTCCTACACTTCAAGCACCGTTGGAACTAAAATCGGGCTTGATACACTTGCTTCCTAAGTTTAGAGGGCTGATGAAAGAAGATCCCTACCAACATCTAAAAGAATTCCATGTGGTTTGCTCAAGCATTAAACCAGAAAGAGTGACCGAAGAGCAAATCAAGTTGAGAGCCTTTCCATTTTCCCTTGATGGCGCGGCAAAAGAATGGTTGTTTTACCAACCTGCGGGTTCCATAACTAGTTGGGAAGGAATGATGAGGCTTTTCTTGGATCGATATTTCCCTTCATCCAGGGTCATTAATGTGAGAAGAGACATCTGTGGGATCAAGCAGAAGGAtccagaattgaaattgaaacaaCTTCCCAAGCACCTTAAGCATGCATTTTTAGAAGCTCAAGTGGAAGAAGAAAGGTTGATCACAGCACTTAGAGAATACAAAGAAGCAATAGGAAGGGTTATAACGGATGTTAAAGGCTTCAACTCATCCACATTCTTGCAAAGAATTGTCCTTGAACAGAATTACAAGTCAATCCAAGAAGCACAAAATCATCTCAATCCTCCAATGATGGAAGTGTTCAAGAAAGAATTTCAGAAGTTATTAGATACTAACATGAATTACCCTGTTTTGGATAGCAAGATTGGTGGTAAATTGCAATGGGTGCCCAAGAAGACTGGTGTGGCAGTCATGAAGAGTTCAGAATTGGGAGATAACATTGTTCCCAAGCCACCAGAttga 1215 0.4 MAMEALLKGLRAAYIETVLKFQLHILRTMGTREKVKPEYITDDDKRKVSFKKREGGFMKKAKKEPSILCGVHEEEGFMKKWSYEDYEEEISRLTINYMGRYADPTMVSDNAFHLMMRVDQNLMEMDRVMEINPISESIAEEKTLREHAAPQVNQAPLCIATPTLQAPLELKSGLIHLLPKFRGLMKEDPYQHLKEFHVVCSSIKPERVTEEQIKLRAFPFSLDGAAKEWLFYQPAGSITSWEGMMRLFLDRYFPSSRVINVRRDICGIKQKDPELKLKQLPKHLKHAFLEAQVEEERLITALREYKEAIGRVITDVKGFNSSTFLQRIVLEQNYKSIQEAQNHLNPPMMEVFKKEFQKLLDTNMNYPVLDSKIGGKLQWVPKKTGVAVMKSSELGDNIVPKPPD 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2670 404 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 72 IPR002100 GO:0003677|GO:0046983
Sto8g2670 404 SMART madsneu2 30 83 IPR002100 GO:0003677|GO:0046983
Sto8g2670 404 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 189 274 - -
Sto8g2670 404 Gene3D - 42 73 IPR036879 GO:0003677|GO:0046983
Sto8g2670 404 SUPERFAMILY SRF-like 31 71 IPR036879 GO:0003677|GO:0046983
Sto8g2670 404 ProSiteProfiles MADS-box domain profile. 30 63 IPR002100 GO:0003677|GO:0046983
Sto8g2670 404 Pfam Retrotransposon gag protein 217 299 IPR005162 -
Sto8g2670 404 PANTHER - 189 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2670 Sto-Chr8 18840332 18856332 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2670 Retrotrans_gag 7.1e-06 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2670 - - pvy:116128915 195.282