Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2667 ATGGCAATGAAAGCACCTCTCAAAGGCTTAAGGACAGCATATATTGAAACTGTACTAAAGTTTCAGTTGCACATATATATTGAGAAAGTGACGTTTGAGTACATCACTGATgatcagaaaagaaaattatcgtCCAAGCAGAGGCAGGAAGGCCTCAAGAAGAAGGCAAGAGAACTCAGTATTCTTTGTGGTGTTGATGTCGTTGCCATTGTTTTCAATGCCCTCTCCGATCCTCATTCTGAAGTTTCTCCGGACGATCGAGGAGTCCATAGGTTTCTGGAGAAGTATCATGGTAGCGCAATCTCAGAGAAGACCCTAAACCAAGAAGGATTAATCCGGGAAAGGCTTAACAAGGTgaaagaatacttgaagaagcGATCCAATGAGAACAACGAGGAAGAGATATCTCAGCTGATGATCAACTATATGGGTGGGTATGCAGATCCCACCATGGTGTCAGAGAATGCACTTCGTTTGAAGATGTTGGTTGAGCAGAATATGAAGGAGATTGATAGGGTGATGGAGGCATCTgggaaagatgatgatgaagtgtATGTTCCAGCTCCACCAATGTCTGAGGAGGGATTGCTGATCAATGGAgctgagaatgagaatgagaatggccAGACTCTGCATCATCATGGCATGGGATTTGATGAAAACTGGAATAGCCCATCATGCTGGAATGACATGGAGGATTTGGAATACTATTTGGGATTTGGCTCATCTTAA 732 0.3839 MAMKAPLKGLRTAYIETVLKFQLHIYIEKVTFEYITDDQKRKLSSKQRQEGLKKKARELSILCGVDVVAIVFNALSDPHSEVSPDDRGVHRFLEKYHGSAISEKTLNQEGLIRERLNKVKEYLKKRSNENNEEEISQLMINYMGGYADPTMVSENALRLKMLVEQNMKEIDRVMEASGKDDDEVYVPAPPMSEEGLLINGAENENENGQTLHHHGMGFDENWNSPSCWNDMEDLEYYLGFGSS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2667 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 74 IPR002100 GO:0003677|GO:0046983
Sto8g2667 243 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Sto8g2667 243 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Sto8g2667 243 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 28 177 - -
Sto8g2667 243 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Sto8g2667 243 SUPERFAMILY SRF-like 28 105 IPR036879 GO:0003677|GO:0046983
Sto8g2667 243 Gene3D - 37 139 IPR036879 GO:0003677|GO:0046983
Sto8g2667 243 ProSiteProfiles MADS-box domain profile. 29 85 IPR002100 GO:0003677|GO:0046983
Sto8g2667 243 CDD MADS_SRF_like 29 97 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2667 243 PANTHER MADS BOX PROTEIN 28 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2667 Sto-Chr8 18824928 18828844 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2667 28 192 MADS-box Gene Family AT5G26630 30.636 4.24e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2667 SRF-TF 6.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2667 - - ini:109164713 107.842