Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2665 ATGCAAGAAATGAGTGTTGTTAATGTTAAGCTTAAGCATAGCAAATGGCAATGGAAGCACATATCAAAGGCTGAAGGGCAGCATATATTGAAACTAAAGCTTCAATGGTCAAAAAATTCTCacaagaaAAAGAAAGTGACGTTCGAGTACATCCCTGATgatcacaaaagaaaattatcGTTCAAGAAGAGGCAGGAAGGCCTCAAGAAGAAGGCAAGAGAGCTCAGCATTCTTTGTGGTGTTGATGTTGTTGCCATTATTTTCAATGCCCTCTTCGATCCTCATTCCGAGGTTTCACCGGACGATCAAGGAGTCCATAGGTTTCTGGAGAAGTATCATGGTAGCGCAATCTCGGAGAAGACCCTGAATCAAGAAGGATTAATCCGGGAGAGGCTTAACAAGATgaaagaatacttgaagaagcGATCCAATGAGAACAATGAGGAAGAAACATCTCAGCTCATGATCAACTATATGGGTGGGTATGCAGATCTCACCATGGTGTCAGAGAATGCAATTCGTTTGAAGATGTTGGTTGAACAGAATTTGAAGGAGATTGATAGGGTGATGGAGGCATCTGGCAAAGAGGATGATGAAGTGTATGTTCCTGCTCCACCAATGTCTGAGGAGGGATTGTTGATCAatggagagaatgagaatggccAGACTCTGCATCATCATGGCATGGGATTTGATGAAAACTGGAATAGCCCATTCTCATGCTGGAATGACATGGAGGATTTTGAATACTTTATGGGATTTGGTTCATCTGAAATGCCGCAAGATTTTGATCAAAATGACAACAACTACCAGAATGCTTCTTCTTCATCCAACAACCGGCCGttttag 849 0.3887 MQEMSVVNVKLKHSKWQWKHISKAEGQHILKLKLQWSKNSHKKKKVTFEYIPDDHKRKLSFKKRQEGLKKKARELSILCGVDVVAIIFNALFDPHSEVSPDDQGVHRFLEKYHGSAISEKTLNQEGLIRERLNKMKEYLKKRSNENNEEETSQLMINYMGGYADLTMVSENAIRLKMLVEQNLKEIDRVMEASGKEDDEVYVPAPPMSEEGLLINGENENGQTLHHHGMGFDENWNSPFSCWNDMEDFEYFMGFGSSEMPQDFDQNDNNYQNASSSSNNRPF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2665 282 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 89 IPR002100 GO:0003677|GO:0046983
Sto8g2665 282 PANTHER MADS BOX PROTEIN 43 193 - -
Sto8g2665 282 SMART madsneu2 41 97 IPR002100 GO:0003677|GO:0046983
Sto8g2665 282 SUPERFAMILY SRF-like 42 121 IPR036879 GO:0003677|GO:0046983
Sto8g2665 282 PRINTS MADS domain signature 43 63 IPR002100 GO:0003677|GO:0046983
Sto8g2665 282 PRINTS MADS domain signature 63 78 IPR002100 GO:0003677|GO:0046983
Sto8g2665 282 PRINTS MADS domain signature 78 99 IPR002100 GO:0003677|GO:0046983
Sto8g2665 282 Gene3D - 53 157 IPR036879 GO:0003677|GO:0046983
Sto8g2665 282 ProSiteProfiles MADS-box domain profile. 41 101 IPR002100 GO:0003677|GO:0046983
Sto8g2665 282 MobiDBLite consensus disorder prediction 259 282 - -
Sto8g2665 282 CDD MADS 43 89 - -
Sto8g2665 282 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 43 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2665 Sto-Chr8 18797797 18801840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2665 43 199 Type I MADS-box Gene Family AT5G48670 33.929 3.19e-17 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2665 SRF-TF 5.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2665 - - cit:102611884 112.464