Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2657 ATGAGTAGAGAGAAAGTGAAGTTCGAGTACATCGCTGATGATCAGAAAAGAAAACTATCGTTTAAGAAAAGGCAGAGAGGCATCAAGAAGAAGGCAAAAGAATTCAATGTTCTTTGCGGTGTTGATGTTGCTGCTATTGCTTATAATGGCCTCTCCGATCCTCATTCCGAGGTCTGGCCAGATGATCAAGGAGTCCAGAGGTTTCTTGACAAGCATCATGGAATGCCAGTGTTGGAGAATACCTTGAACCAAGAAGAATTAATCCAGAAGAGGCTTCACAAGGTGAATGAATACTTGAAGAAGCGATCTAATGAGAACTTCAAGGAAGAGATATCTCAGCTGATGATCAACTATATGGGTGGGGTGATGGAGGCATCTgggaaagaggaagatgaagtGTATGTTCTAGTAGCTCCACCAATGTCTGAGGAGGGATTGTTGATCAATGGAAGAAATGAGAATGGCCAGACACTGCATCATCATGGCATGGGATCTGATGAAAACTGGAATAGCCCATCATGCTGGAATGATATGGAGGATTTGGAATACTTAATGGGATTTGCTTCATCTGAAAAAATGCCGCAAGATTTTCAAAATGACAACTACCAGAATAATGCTTCTTATTCTTCCAATTACAGCGCcttttatccttaa 654 0.3945 MSREKVKFEYIADDQKRKLSFKKRQRGIKKKAKEFNVLCGVDVAAIAYNGLSDPHSEVWPDDQGVQRFLDKHHGMPVLENTLNQEELIQKRLHKVNEYLKKRSNENFKEEISQLMINYMGGVMEASGKEEDEVYVLVAPPMSEEGLLINGRNENGQTLHHHGMGSDENWNSPSCWNDMEDLEYLMGFASSEKMPQDFQNDNYQNNASYSSNYSAFYP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2657 217 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g2657 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Sto8g2657 217 Gene3D - 13 114 IPR036879 GO:0003677|GO:0046983
Sto8g2657 217 PANTHER MADS BOX PROTEIN 2 122 - -
Sto8g2657 217 CDD MADS_SRF_like 3 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2657 217 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Sto8g2657 217 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Sto8g2657 217 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 122 - -
Sto8g2657 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto8g2657 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto8g2657 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2657 Sto-Chr8 18753856 18754590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2657 3 216 Type I MADS-box Gene Family AT1G65330 29.148 1.37e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2657 SRF-TF 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2657 - - dcr:108207773 99.7525