Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2656 ATGCCGCCGACTTCATGGCAAAGCTTAGCCATAACCTCCCTGATGGTTTGCATGTTTTTGACAGGCCTCAAACAGAAAGTGAAGCTTGAGTACATCACTGATGATCTCAAAAGAAAAGCATCGTTCAGGAAAAGGAAGGAGAACGTCGTAAAGAAGACAAATGAACTCAATATCCTTTGTGATGTTGATGCTGCTGCTATTATTTACAGTGGGCGCTCAGCTGATTCACATCTCCAGGTTTGGCCAGATGATGGAGGAGTCCATAGGTTTCTTGACAAGTATCATGGTAGTTCAGTGTCGGAGAAGACCTTGAACCAAGAAGGATTGATCCAGCAGAGGCTTCACAAGGAGAAAGAACATTTGAAGAAGCGATCTAATGAAAACAAGGAGGAAGAAATATCTCAGCTCATGATCAACTATATGGGTGGGCATGCAGATCCCACCATGGTGTCAAAGAATGCACTTCGTTTGAAGATGTTGGTTGATCAGAAGTTGAAGGAGATTGATAGGGTGATGGAGGCATTTGGGAAAGAGGATGAAGTGTATGTTCCAGCTCCACCAATGTCTGAGGAGGCATTGTTGATCAatggaggaaatgagaatgaccAGATTAATCTGCATCATGGCATGGGATCTGGAAACTGGAATAGCCCATCGTGCTGGAATAACATGGAGGATTTGGAATACTATATGGGCTTTGGTTCATCTGAAATGCCGCCAGCTTTTCAAAATGACAACTACCAGAATGCTTCTTCATCCAGCAACCcgttttatccttaa 780 0.4179 MPPTSWQSLAITSLMVCMFLTGLKQKVKLEYITDDLKRKASFRKRKENVVKKTNELNILCDVDAAAIIYSGRSADSHLQVWPDDGGVHRFLDKYHGSSVSEKTLNQEGLIQQRLHKEKEHLKKRSNENKEEEISQLMINYMGGHADPTMVSKNALRLKMLVDQKLKEIDRVMEAFGKEDEVYVPAPPMSEEALLINGGNENDQINLHHGMGSGNWNSPSCWNNMEDLEYYMGFGSSEMPPAFQNDNYQNASSSSNPFYP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2656 259 ProSiteProfiles MADS-box domain profile. 22 73 IPR002100 GO:0003677|GO:0046983
Sto8g2656 259 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 25 179 - -
Sto8g2656 259 SUPERFAMILY SRF-like 24 117 IPR036879 GO:0003677|GO:0046983
Sto8g2656 259 SMART madsneu2 22 83 IPR002100 GO:0003677|GO:0046983
Sto8g2656 259 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 70 IPR002100 GO:0003677|GO:0046983
Sto8g2656 259 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Sto8g2656 259 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Sto8g2656 259 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Sto8g2656 259 Gene3D - 34 135 IPR036879 GO:0003677|GO:0046983
Sto8g2656 259 PANTHER MADS BOX PROTEIN 25 179 - -
Sto8g2656 259 Coils Coil 111 131 - -
Sto8g2656 259 CDD MADS_SRF_like 24 105 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2656 Sto-Chr8 18736572 18737733 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2656 23 187 Type I MADS-box Gene Family AT1G65330 33.728 5.27e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2656 SRF-TF 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2656 - - twl:119992006 119.783