Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2654 ATGGCGGGTGAGTCGCAGAATTGGGTGCTGATGGTGACGGCCCAGACACCAACCAATATTGCTGTGATCAAGTATTGGGGGAAGAGGGATGAAACCCTAATCTTGCCTGTGAACGACAGTATTAGTGTTACGCTTGATCCGAAGCATCTCTGCACCACTACTACTGTTGCTGTGAGTCCCAGCTTCCAGCAAGATCGTATGTGGCTCAATGGCAAGGAGATTTCTCTTTCTGGAGGCAGGTACCAGAACTGTTTAAGGGAGATCCGAAGCCGTGCTTGTGATGTTGAGGATAAGAAAAGGGGTATTAAAATCCTGAAAGAAGACTGGGGTAAATTGCATTTACACATTGCTTCATACAACAACTTCCCCACGGCTGCTGGACTGGCATCTTCTGCTGCTGGCCTTGCCTGTCTTGtttTTGCCCTTGCAAAGCTTATGAATGTCAAAGAAGATGAAAGCCAGCTATCTGCTATTGCTAGGCAAGGATCAGGTAGTGCTTGTCGCAGCTTATATGGTGGATTTGTCAAGTGGATAATGGGAAAAGAGGAGAATGGAAGTGATAGTCTTGCTGTTCAACTTGCTGATGAAAAGCACTGGGATGATCTTGTTATTGTTATTGCAGTGGTTAGTGCACGGCAAAAGGAAACAAGTAGCACCTCAGGAATGCGTGATACTGTCGAAACTAGTCTGCTTTTACAACACAGAGCAAAGGAAATAGTGCCAAAACGCATACTGCAAATGGAGGAGGCCATTAAGAATCGTGATTTTGCATCTTTTGCACGATTGACCTGTACCGATAGTAACCAGTTTCATGCAGTGTGCCTGGATACGTGTCCCCCTATATTTTACATGAATGATACATCTCACAAAATTATCAGCATCGTTGAGAAGTGGAACCGTTCAGAAGAAACTCCCCAGGTAGCATATACATTTGATGCGGGGCCAAATGCAGTTCTAATTGCACGAAATAGGCAAACTGCTGCCCTTTTGATTCAGAGGCTGCTTTACTACTTTCCTCCAAATTCAGATGACCTTGACAGTTACATCATTGGTGATAAGTCAATTTTACAAGATGCTGGGCTTAAGGGTATAAATGATGTAGAAGTTTTGCCTCCTCCTCCTGAAATTAAGGATAATATTCCATCACAAAAATACAAGGGGGAAGTCAATTACTTCATCTGTACAAAACCTGGAAGGGGACCGGTTTTGCTTGCCGACGAAGATCTGGCTCTTCTCAACATTGATTTGTTTTATCCATGTTTATGTAATGCTTTTCCAAAtctgttagAAAGGCTTAATGGTGAGATAGTTCTATATAAAGGAGAGATCTTAAGGGATAATTGTGACAAAAATCTTTTGGTTTCCTTAATCATAACCATGGGCAAAGAGAAAGTGAAGCTTGAGTACATCACTGATGATCTCAAAAGAAAAGTCTCATTCAGGAAAAGGAAGGAGAACATCGTAAAGAAGACAAGTGAACTCAGTGTCCTCTGTGATGTTGATGCTGCTGCTATTATTTACAGTGGGCGCTCTAATTCACGTCCCCAGGTTTGGCCAAATGATCGAGGAGTCCATAGGTTTCTTGAGAAGTACCATGGTAGGCCAGTGTTAGAGAAGACCTTGAATCAAGAAGGATTAATCCAGCAGAGGCTTCACAAGGagaaagaatacttgaagaagcGATCTAATGAGAACTACGAGGAAGAAATATCTCAGCTGATGATCAACTATATGGGTGGGTATGCAGATCCCACCATGGTGTCAGAGAATGCACTTCATTTGAAGATGTTGGTTGAGCAGAAATTGAAGGAGATTGATAGGGTGATGGAGGCATATGGGAAAGAGGATGATGAAGTGTATGTTCCAGCTCCACCAATGTCTGAGGAGGGATTGTTAATCAATGGAGGAAATGAGGATCATGGCATGGGATCTGGAAACTAG 1941 0.424 MAGESQNWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPKHLCTTTTVAVSPSFQQDRMWLNGKEISLSGGRYQNCLREIRSRACDVEDKKRGIKILKEDWGKLHLHIASYNNFPTAAGLASSAAGLACLVFALAKLMNVKEDESQLSAIARQGSGSACRSLYGGFVKWIMGKEENGSDSLAVQLADEKHWDDLVIVIAVVSARQKETSSTSGMRDTVETSLLLQHRAKEIVPKRILQMEEAIKNRDFASFARLTCTDSNQFHAVCLDTCPPIFYMNDTSHKIISIVEKWNRSEETPQVAYTFDAGPNAVLIARNRQTAALLIQRLLYYFPPNSDDLDSYIIGDKSILQDAGLKGINDVEVLPPPPEIKDNIPSQKYKGEVNYFICTKPGRGPVLLADEDLALLNIDLFYPCLCNAFPNLLERLNGEIVLYKGEILRDNCDKNLLVSLIITMGKEKVKLEYITDDLKRKVSFRKRKENIVKKTSELSVLCDVDAAAIIYSGRSNSRPQVWPNDRGVHRFLEKYHGRPVLEKTLNQEGLIQQRLHKEKEYLKKRSNENYEEEISQLMINYMGGYADPTMVSENALHLKMLVEQKLKEIDRVMEAYGKEDDEVYVPAPPMSEEGLLINGGNEDHGMGSGN 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2654 646 PRINTS MADS domain signature 462 482 IPR002100 GO:0003677|GO:0046983
Sto8g2654 646 PRINTS MADS domain signature 482 497 IPR002100 GO:0003677|GO:0046983
Sto8g2654 646 PRINTS MADS domain signature 497 518 IPR002100 GO:0003677|GO:0046983
Sto8g2654 646 PANTHER DIPHOSPHOMEVALONATE DECARBOXYLASE 1 415 - -
Sto8g2654 646 SUPERFAMILY Ribosomal protein S5 domain 2-like 10 196 IPR020568 -
Sto8g2654 646 Gene3D - 12 194 IPR014721 -
Sto8g2654 646 SUPERFAMILY SRF-like 461 554 IPR036879 GO:0003677|GO:0046983
Sto8g2654 646 Pfam Mevalonate 5-diphosphate decarboxylase C-terminal domain 204 403 IPR041431 -
Sto8g2654 646 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 469 512 IPR002100 GO:0003677|GO:0046983
Sto8g2654 646 TIGRFAM mevDPdecarb: diphosphomevalonate decarboxylase 13 329 IPR029765 GO:0004163|GO:0005829|GO:0019287
Sto8g2654 646 Gene3D - 195 403 IPR036554 -
Sto8g2654 646 Gene3D - 472 566 IPR036879 GO:0003677|GO:0046983
Sto8g2654 646 PANTHER DIPHOSPHOMEVALONATE DECARBOXYLASE 1 415 - -
Sto8g2654 646 CDD MADS_SRF_like 461 542 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto8g2654 646 Pfam GHMP kinases N terminal domain 115 173 IPR006204 GO:0005524
Sto8g2654 646 SMART madsneu2 460 520 IPR002100 GO:0003677|GO:0046983
Sto8g2654 646 ProSiteProfiles MADS-box domain profile. 460 511 IPR002100 GO:0003677|GO:0046983
Sto8g2654 646 SUPERFAMILY GHMP Kinase, C-terminal domain 202 404 IPR036554 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2654 Sto-Chr8 18714600 18723604 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2654 462 580 Type I MADS-box Gene Family AT1G65300 40.984 2.75e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto8g2654 MDD_C 2.5e-68 CL0677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2654 K01597 - gmx:100800990 743.421