Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2648 ATGGATGTTCTATCTATTTCTTCTACATTCAACAAATCCATAACCTTTTCCATTCTCAAACCTCCAGGAACCCTACTTCAGCACTTTCCCATAAACCTCAGATTACCCAATTCCTTCAACAAAACTTCCCATTTCaatcttcctccttcttcttcttctttcagtTTCTGTTCAAGGATATCGGCAACTTCAACAACTACAGACACTTGGTTCGCTTCTTCCTCCACTGAGAACCGCCATTGGATAGTAATCATGGAGAAGCCTCCACAAGGGGTCAATTCCAAGCCACAAGTCATTGATTATTATGTTCAAACTCTTCAAAGAGTTCTTGGCAGCAGTGAGAAAGAAGCTCAAATGTGTATTTATGATGCTTCCTGGGATACCCAATTCGGCTTTTGTTGTGACATCGATGAAGAAGCTTCCTCCCAGCTTGCTCGTATACCCGGGGTTGTTTCGGTTAAGTCCGATCCAGATTTCAACTCGGCAGAGAAGGATTATAGTTATAGGTCATCAAATGTGCAGGAAGATAATTTTTCAAAGCTACAAACTGGAGTCAATTTGTTGTTCCCTTCAGGGAATTCAAAGCATTGGCTTGTTAGAATGGATAAACCTGGGGTTGGGATTGTTACAAAGGCCCAAGTTGTGGATTATTATGCTCAAATACTGACTAAAGTCATCGGAAATGAGAAGGATGCACAAATGTGCATATACCATGTTTCCTGGAAAACCAACTTTGGCTTTTGTTGTGAACTCGATGAGGATTGCGCACGAGAGCTAGCTGGCGTGCCTGGTGTCTTATCAGTTCAGCCAGATAATAATTTTGAGTCAGAAAATAAGGATTATGGAGGTAGTAACTTAGAAAACAGTATGAATGTGCTGAACTCTTCTGGAGCAAGTCAGGCAACCCctgtaaaaacaaaaaaacttttTGTGACAGGCCTATCGTTTTATACATCTGAGAAAACCTTGCGTGCTGCATTTGAAGGCTTTGGTGAGCTTGTAGAAGTTAAGGTTATTATGGATAAGATTTCTAAAAGGTCCAAGGGTTATGCATTTGTGGAATACACCACAGAGGAGGCTGCTGCTGCAGCATTGAAAGAGATGAATGGGAAGATTATCAATGGCTGGATGATAGTTGTTGATGTTGCCAAGACTATTCCATCAAAATACAACAGGGGTCGTGCCAGATCTGCTGCTTGA 1200 0.4 MDVLSISSTFNKSITFSILKPPGTLLQHFPINLRLPNSFNKTSHFNLPPSSSSFSFCSRISATSTTTDTWFASSSTENRHWIVIMEKPPQGVNSKPQVIDYYVQTLQRVLGSSEKEAQMCIYDASWDTQFGFCCDIDEEASSQLARIPGVVSVKSDPDFNSAEKDYSYRSSNVQEDNFSKLQTGVNLLFPSGNSKHWLVRMDKPGVGIVTKAQVVDYYAQILTKVIGNEKDAQMCIYHVSWKTNFGFCCELDEDCARELAGVPGVLSVQPDNNFESENKDYGGSNLENSMNVLNSSGASQATPVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAAAAALKEMNGKIINGWMIVVDVAKTIPSKYNRGRARSAA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2648 399 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 46 397 IPR039206 GO:0016554
Sto8g2648 399 Gene3D - 278 399 IPR012677 -
Sto8g2648 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 385 IPR000504 GO:0003723
Sto8g2648 399 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 46 397 - -
Sto8g2648 399 SMART rrm1_1 308 381 IPR000504 GO:0003723
Sto8g2648 399 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 189 275 IPR037045 -
Sto8g2648 399 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 62 160 IPR037045 -
Sto8g2648 399 SUPERFAMILY RNA-binding domain, RBD 298 395 IPR035979 GO:0003676
Sto8g2648 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 375 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2648 Sto-Chr8 18649182 18652376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2648 304 389 C2H2 Transcription Factor Family AT2G19380 36.047 3.93e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2648 - - vun:114191397 543.502