Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto8g2647 | ATGTATTGCAATTTTAAGGAGCAAGCAGCGGAGTACGTGAAGCAAGCAGTTCATGAGGATGATGCTGGAAACTATAAGAAAGCATTTACACTTTATATGAGTGCGTTAGAATACTTGAAGACACATTTGAAGTATGAGAAGAACCCCAAGATCAAGGAAGCTATTACCCAGAAATTTGTTCAATACCTGAGGAGGGCGGAGGAGATAGGTGCCATTCTTGAtgcaggaggaggaggaagtggGGTTAACGCGTCTAGTGGTGGTGGAACTCAATCTGATGCTGTAAGACCAAATGCAAAGTCAAGGAGTAGAGAAGAGAAAGATAAGGAGGATCCGGAGAAAGCAAAGCTCAAGGCTGGTCTTGATTCTGTAATAATCAGAGAGAAACCCAATGTCAAATGGAGTGATGTTGCTGGGCTTGAGAGTGCCAAACAGGCATTACAAGAGGCTGTTATATTGCCTGTTAAGTTCCCTCAATTTTTTACTGTATCTCATACTTGTTTAGGGAAGAGACAACCATGGAGAGCATTTCTTTTATATGGTCCTCCTGGAACAGGGAAGTCATATATAGCAAAAGCTGTAGCTACAGAGGCAGACTCGACATTCTTCAGTGTTTCATCATCAGATCTTGTTTCTAAATGGATGGGTGAAAGTGAAAAGCTGGTTTCCAGTCTGTTCCAAATGGCTCGTGAAAGTGCtccttcaattatttttattgacgaAATAGATTCTTTATGCGGCCAACGAGGTGAAGGCAATGAGAGTGAAGCATCTAGACGCATCAAAACTGAACTTCTTGTACAAATGCAGGGTGTGGGTAAGGAAGATCAGAAAGTTCTCATACTAGCTGCTACGAATACTCCTTATGCTCTGGATCAGGCCATCCGACGACGCTTTGACAAACGAATCTACATACCTCTCCCAGACATGAAGGCAAGGCAGCACATGTTTAAGGTGCATCTTGGTGATACTCCACATAACTTAACTGAAAAAGATTTTGAGGAGTTGGCCCGCAAAACTGATGGATTCTCTGGTTCAGATATTTCTGTTTGTGTTAAGGATGTACTTTTTGAACCTGTTCGTAAAACCAGGGATTCCAAATTCTTTAGACAAACCTCTGATGGAATGTGGGTCCCTTGCGAGCCTAATCAAAGAGGAGCTGTTAACATTAGCCTGCAAGAACTTGATGCACAGGGCCTTGCTTCGAAGATTGTGCCGCCACCAATTGCAAGAGCAGATTTTGATAAAGTATTAAAGAAGCAGAAGCCAACAGTAAGTAAAGCTGATCTTGAGGTGCATGAGAGATTCACCCAGGAGTTTGGCGAGGAGGGTTGA | 1335 | 0.4142 | MYCNFKEQAAEYVKQAVHEDDAGNYKKAFTLYMSALEYLKTHLKYEKNPKIKEAITQKFVQYLRRAEEIGAILDAGGGGSGVNASSGGGTQSDAVRPNAKSRSREEKDKEDPEKAKLKAGLDSVIIREKPNVKWSDVAGLESAKQALQEAVILPVKFPQFFTVSHTCLGKRQPWRAFLLYGPPGTGKSYIAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGKEDQKVLILAATNTPYALDQAIRRRFDKRIYIPLPDMKARQHMFKVHLGDTPHNLTEKDFEELARKTDGFSGSDISVCVKDVLFEPVRKTRDSKFFRQTSDGMWVPCEPNQRGAVNISLQELDAQGLASKIVPPPIARADFDKVLKKQKPTVSKADLEVHERFTQEFGEEG | 444 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto8g2647 | 444 | SMART | smart | 2 | 79 | IPR007330 | - | |
| Sto8g2647 | 444 | Gene3D | - | 309 | 424 | - | - | |
| Sto8g2647 | 444 | Pfam | ATPase family associated with various cellular activities (AAA) | 178 | 307 | IPR003959 | GO:0005524|GO:0016887 | |
| Sto8g2647 | 444 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 124 | 426 | IPR027417 | - | |
| Sto8g2647 | 444 | MobiDBLite | consensus disorder prediction | 80 | 116 | - | - | |
| Sto8g2647 | 444 | MobiDBLite | consensus disorder prediction | 98 | 116 | - | - | |
| Sto8g2647 | 444 | CDD | AAA | 170 | 307 | - | - | |
| Sto8g2647 | 444 | SUPERFAMILY | MIT domain | 4 | 86 | IPR036181 | - | |
| Sto8g2647 | 444 | PANTHER | PROTEIN SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 | 1 | 444 | - | - | |
| Sto8g2647 | 444 | Pfam | Vps4 C terminal oligomerisation domain | 377 | 441 | IPR015415 | - | |
| Sto8g2647 | 444 | Gene3D | - | 130 | 432 | IPR027417 | - | |
| Sto8g2647 | 444 | PANTHER | AAA DOMAIN-CONTAINING | 1 | 444 | - | - | |
| Sto8g2647 | 444 | MobiDBLite | consensus disorder prediction | 83 | 97 | - | - | |
| Sto8g2647 | 444 | SMART | AAA_5 | 173 | 309 | IPR003593 | - | |
| Sto8g2647 | 444 | Pfam | MIT (microtubule interacting and transport) domain | 7 | 69 | IPR007330 | - | |
| Sto8g2647 | 444 | Gene3D | - | 6 | 74 | - | - | |
| Sto8g2647 | 444 | ProSitePatterns | AAA-protein family signature. | 279 | 298 | IPR003960 | GO:0005524|GO:0016887 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto8g2647 | Sto-Chr8 | 18643083 | 18647720 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto8g2647 | 168 | 381 | Calmodulin-binding Proteins | AT3G56690 | 35.648 | 1.48e-35 | 138 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto8g2647 | K12196 | - | zju:107413023 | 706.057 |