Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2640 ATGGCCTCTTCCCAGCATCGCTGTGTTTTTGTGATGGGAATTTTCGGAGTTGTGTTCTTAGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATTTGCCAGGAGGTTGGGCCTGTTGTGTCATTCAGATTAGTTATTGATAGAGAAACTGGAAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACCGCTCTAAGTGCCCGCCGTAACCTTCAGGGGTATGAGATCAATGGGCGGCAATTGCGTGTTGATTTTGCTGAAAATGATAAAGGTGCTGATAGAAATAAAGAACAGGGGCGTGGTGGGCCAGGATTAGCTGCAAATGTTGATCCTCAGAAACAAGTTGGTGGGCCAGCTGTCCTTGGGGATGCTGTTCACCATCAACCTATTGGTCTTCATATTGCTATTACAGCTGCAGCTGTCATGGCTGCAGCTCTTGGAGGTGCTCAGTCTGGCATCCAGTCAAATCAAAATGGTTTGCAGGGTCAGTCAGCATTGGCACATGACCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGAATGAGATTATCTCTCAGCTCAAGGCAATGGCTACACAGAACAAGGCATTAGCTCGCCAGTTGTTACTTTCTAGGCCACAGTTGCCTAAGGCTCTTTTCCAGGCACAGATAATGCTAGGAATGGTGACCCCACAAATGTTACAAATGCCGAACCTTAGGCAGGTTTCAGGTCAAACCTCACAGCCTCCAGTGGATGAAGGCCAGCTAGGTCAGCCAGCGATGCTTCAAACTCTATCTGGGCTACCCCCTCATGCACAGATCAATTTGCAGTCTGGCTTGATCCCCAATATTCAAGAAGCTCAAGTCAGCACCATACGTCATAATTCTTTGGTTCCAAATCAATTAACTGCGCATCCAAAGCCTCCTTTGCAGCCTCGAATGCCGCTTTCACAACATCCAAGCAACCCTGTTGCACAGCTAGGCACATTGCCAGGGCATTCTAATTTAACACTTCCCTCTGTGCGCCCCCAGTCTCTGGGCAGTTTGCCTGTTAGACCGCCAATTCAGCTGGCAACTTCAACTTCCCTGAATCAGCAAATGCATGCCCCTCTGATACAGAAGTCAGGACAGGTTGGTAGCTCAAGTGTAGGACAAAATATTCGGATGGTTCGTCCAGATGCAAGCTTTCAGCCTGGGCTATCCATATCGTCAGGTATGTCTAAGTCAATTAGTAGGGAAGTTGATAGATCAGCTAAAGTTCTTGAGGATTCCACTTGGGCAGCCAAAAAAAGTAGCTCATATTCTAACATTCCTGTTGGATCAGGAGAGAAAACAAATGTGGTCCATGAGTCTTCAGAACCGTTCATTCGCCCTTCAAAACTGATAAAATTGGATGAAGGAAGGAGCACCTCTTTCTCTGCAGGAGTTTCAAATGTACCTATCACCAAAGGATCATCCCAAGTTCTTGGAAGTAGCTCATTGCCTGTAAATGTGGCTCCTAAAGCAGAGATGCATTACTCTGAGCAACAATCCTTTCAGTCCCAGCTTCCACCGGATGTTGAATCGGTTTTACTGCAACAAGTGTTGAGTCTAACACCGGAGCAATTGAGTTCTTTGCCTCCAGAACAGCAACAGCAGGTCATTCAACTCCAGCGGGCTCTCCGGCGAGATCAGATCCAGCCCTCGTAG 1698 0.47 MASSQHRCVFVMGIFGVVFLVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNKEQGRGGPGLAANVDPQKQVGGPAVLGDAVHHQPIGLHIAITAAAVMAAALGGAQSGIQSNQNGLQGQSALAHDPLTLHLAKMSRSQLNEIISQLKAMATQNKALARQLLLSRPQLPKALFQAQIMLGMVTPQMLQMPNLRQVSGQTSQPPVDEGQLGQPAMLQTLSGLPPHAQINLQSGLIPNIQEAQVSTIRHNSLVPNQLTAHPKPPLQPRMPLSQHPSNPVAQLGTLPGHSNLTLPSVRPQSLGSLPVRPPIQLATSTSLNQQMHAPLIQKSGQVGSSSVGQNIRMVRPDASFQPGLSISSGMSKSISREVDRSAKVLEDSTWAAKKSSSYSNIPVGSGEKTNVVHESSEPFIRPSKLIKLDEGRSTSFSAGVSNVPITKGSSQVLGSSSLPVNVAPKAEMHYSEQQSFQSQLPPDVESVLLQQVLSLTPEQLSSLPPEQQQQVIQLQRALRRDQIQPS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2640 565 MobiDBLite consensus disorder prediction 303 325 - -
Sto8g2640 565 SMART rrm1_1 18 91 IPR000504 GO:0003723
Sto8g2640 565 Coils Coil 190 210 - -
Sto8g2640 565 Gene3D - 159 240 - -
Sto8g2640 565 SUPERFAMILY RNA-binding domain, RBD 20 111 IPR035979 GO:0003676
Sto8g2640 565 MobiDBLite consensus disorder prediction 93 120 - -
Sto8g2640 565 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 2 560 - -
Sto8g2640 565 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 89 IPR000504 GO:0003723
Sto8g2640 565 CDD RRM_CSTF2_CSTF2T 18 93 - -
Sto8g2640 565 Gene3D - 520 563 IPR038192 -
Sto8g2640 565 Gene3D - 17 124 IPR012677 -
Sto8g2640 565 Pfam Hinge domain of cleavage stimulation factor subunit 2 173 238 IPR025742 -
Sto8g2640 565 Pfam Transcription termination and cleavage factor C-terminal 527 559 IPR026896 GO:0031124
Sto8g2640 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2640 Sto-Chr8 18565937 18572951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2640 19 92 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 6.46e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2640 K14407 - gmx:100794399 739.569