LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto8g2617	ATGGCGGGAGCTACAGGAAGAGCCCTCTTCACTCTCTCTCTAACCTCCCACCTTTCTTCACTCTCACGCCTTTCTCATGCCCACCGCATTCCATTTCTCAAACTCTCCACAAAACCCACTAGGGTTTTGCTAGGGTTTAGGCCCCTCTGCACCGCCACAGCCTCCACCTCCGCCGGAACCGCCGACACGACGGAATCTATCGACCCAGACCAAATCAGGCATTCAATTCTTCTTGAGAGACTCAGATTCCGGCATCTTAAGGAGACCGGTAAAGCCCCAGAAATTAAGAATTTGACAAAGCCCGCTGCTTCCGCTGAGAAGGGTCGTGGGAATGAGCTGATGAAgtcggagaagaagaagaagttggtTGGCAGTTTTGAGGAGTTAGGCCTCAGTGAAGAGGTCATGGGAGCCGTGAGGGAGATGGGTATTGAGGTTCCTACTGAGATTCAGTGTATCGGCATTCCTGCTATCTTGGAAGAGAAGAGTGTGGTTTTGGGATCTCATACTGGGTCTGGAAAGACTCTTGCTTACATGCTTCCTCTAGTTCAGTTGCTAAGACGGGATGAAGAATTGAATGGATTACTTATGAAACCCAGGCGTCCCCGAGCTGTTGTGTTATGCCCTACAAGGGAGCTGTCTGAGCAGGTGTTTCGAGTTTCGAAGTCTATAAGCCATCATGCAAGATTCAGGTCTACCATGGTAAGTGGTGGCGGCCGTCTCAGGCCTCAGGAGGATTCTTTAAATAACCCCATAGACATGGTAGTAGGTACCCCTGGCAGAATTCTGCAACACATTGAGGAGGGAAACATGGTATATGGTGACATTAAATACTTGGTATTGGATGAGGCAGATACAATGTTTGATCGTGGCTTTGGTCCTGATATACGAAAGTTTCTTGCCCCGCTAAAGCATCGTGCATCGAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGTCACTGCAACAATGACAAAGGCAGTGCAAAAGTTGATTGATGAGGAGTTTCAAGGCATTGTGCATCTGCGCACATCAACACTACATAAAAAGATTGCATCTGCCCGTCATGATTTTATTAAGCTTTCTGGTTCTGAGAACAAGCTAGAAGCGTTACTACAGGTTCTTGAGCCAAGTCTTGCAAAGGGGAACAGAGTGATGGTTTTCTGCAATACATTGGATTCTAGCCGTGCTGTGGATCATTTTCTCAGTGAAAATCAGATAGCAACTGTCAACTACCATGGAGAGGTACCAGCAGAGAAGAGGGTTGAAAACCTCAAGAAGTTTAAGAGTGATGACGAAGGTTGTCCTACATTGGTTTGCACAGACTTGGCAGCTAGGGGTCTGGACCTAGATGTCGATCATGTTATCATGTTTGATTTCCCCTTAAATTCTATTGACTACCTTCACCGCACTGGTAGAACAGCTCGTATGGGTGCCAAAGGGAAAGTAACAAGCTTGGTTGCTAAAAAGGATTTGACCCTGGCTGCTCGAATAGAGGAAGCAATAAGGAAGAATGAGAGCTTGGAAGCTCTCACTAAAGAAAGTGTTAGGAGGGACATTGTCAGGACCCAAATAACTCAGCAGAAGGGGAAGAATACAAAATTAGTTAAAGTTTCCAAAGCCAAAACTGCTTCTGGTGTCCGTGCCACTTCTACTTCTGGTGTTCTTCGTGACACTCCTAGAAAAGCATCGAAAAGCAATTCTCTTGTTCGTGTCTCTTCTAGAAAAGCATCAAAACCCTTGAAATCTGGGAAGGCAGGAGGAATTCAGGTTAAGAAATCTGTAAAATCTTCCAGTGCAGGTAGCACGAGAAAAGCTCCTGCAAGGAAGACACAAGCAAGTAAAAGGGATAATGGTGGCAAATCCACAAATACTAAACTGAgtgttgtagggtttagggggCGGAGTTCATCCTCAAATAAGAAAGCATCACAATTTTGA	1941	0.4477	MAGATGRALFTLSLTSHLSSLSRLSHAHRIPFLKLSTKPTRVLLGFRPLCTATASTSAGTADTTESIDPDQIRHSILLERLRFRHLKETGKAPEIKNLTKPAASAEKGRGNELMKSEKKKKLVGSFEELGLSEEVMGAVREMGIEVPTEIQCIGIPAILEEKSVVLGSHTGSGKTLAYMLPLVQLLRRDEELNGLLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLAPLKHRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLSENQIATVNYHGEVPAEKRVENLKKFKSDDEGCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLTLAARIEEAIRKNESLEALTKESVRRDIVRTQITQQKGKNTKLVKVSKAKTASGVRATSTSGVLRDTPRKASKSNSLVRVSSRKASKPLKSGKAGGIQVKKSVKSSSAGSTRKAPARKTQASKRDNGGKSTNTKLSVVGFRGRSSSSNKKASQF	646

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto8g2617	646	CDD	SF2_C_DEAD	355	487	-	-
	Sto8g2617	646	MobiDBLite	consensus disorder prediction	528	646	-	-
	Sto8g2617	646	SMART	helicmild6	396	478	IPR001650	-
	Sto8g2617	646	SMART	ultradead3	143	362	IPR014001	-
	Sto8g2617	646	Pfam	Helicase conserved C-terminal domain	367	478	IPR001650	-
	Sto8g2617	646	MobiDBLite	consensus disorder prediction	617	646	-	-
	Sto8g2617	646	MobiDBLite	consensus disorder prediction	544	574	-	-
	Sto8g2617	646	MobiDBLite	consensus disorder prediction	592	608	-	-
	Sto8g2617	646	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	201	497	IPR027417	-
	Sto8g2617	646	Gene3D	-	352	574	IPR027417	-
	Sto8g2617	646	Pfam	DEAD/DEAH box helicase	148	331	IPR011545	GO:0003676\|GO:0005524
	Sto8g2617	646	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	155	342	IPR014001	-
	Sto8g2617	646	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	124	152	IPR014014	GO:0003724
	Sto8g2617	646	CDD	DEADc	135	334	-	-
	Sto8g2617	646	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	31	554	-	-
	Sto8g2617	646	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	367	517	IPR001650	-
	Sto8g2617	646	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	31	554	-	-
	Sto8g2617	646	Gene3D	-	90	343	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto8g2617	Sto-Chr8	18381930	18386988	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto8g2617	123	500	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.982	3.76e-41	153

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto8g2617	-		-	rcu:8281391	869.381