Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2542 ATGGGCCCCTTCCTCTGGGCCCTAGTGTCACAAAAGTCATCCAAATGGCCCATCCTCCATCTGCCGGCCCATATTTCTTTCTCCAATTTTCAAAAACCCCCCAattcttcttctctcctttcTTCCTCACTCTGTTTCATCTCCACCATCTTGCATCCTTCCTCGGCCACAATGCAACCACTCGCCGCCTACACCGCCTCAACCGGAGCAATTCAATCTTCCACCGATACTCTCACCGGCGAGTTCAAAAATCTCAGCTGCGAATCCACCGCCACAACGAATTCGTCCGCCGAAGACATCGCCGGCGACTTCGACGATCTCAATGGCAACGCCGCCTCCGGTACCGCCATTATCGAGAAGAAACAGAGCACTTCACAATCCGCCAAATCCTATACACAATCATCGGTTTCGGTTTCGGTTTCGGATTCGGACCCTAGCCGAGACGCGATCGATCGGTTCAAATCCGACGGCGTCGGGTCGAACCGGGCGACGATAGGCATGGAAGACATCCGGTTCGTGAGGCGCGTGGGGAGCGGGGACATCGGGAGCGTGTACGTGGCGGAGGTGAAGGGATGGGAAGAAGCAGAAGAGTGCGTGTTTGCGGCGAAGGTGATGGATAAGGAGGAGCTTGTGAGcaggaagaaggaagagaggGCGAGGACAGAGAGGGAAATACTTGAAATGTTGGACCACCCGTTCTTGCCCACGCTTTACGCCGCGATCGATTCGTCGCGGTGGTGCTGCTTGCTGACGGAGTTCTGCCCCGGCGGCGACCTCCACGTCCTCCGTCAACGCCAACCGCTTCAACGCTTCCACGAAGACGCAGTACGATTCTATGCATCAGAAGTAGTTATTGCATTGGAGTACCTACACATGATGGGAATAATATACCGTGATTTGAAGCCCGAAAACGTACTTATAAGATCGGACGGTCATATAATGCTCACAGATTTTGATCTTTCACTCAAAGCCGATGATTCCTCCACATCAACGGCTCAGATTATATTTGACCACCACCTTCCACCTCACACCGACCAATCGTCCTCTGCCATGTCATCCTGCATCCTGCCCAATTGCATCGTGCCAGCTGTCCCCTGCTTCCACCCAAAACGCAACCGCAAGAAGAAGCGATCCTCACGTTGTGGGTCCCTAGAGATCGTAGCGGAGCCAATAGAAATTCGATCCATGTCCTTCGTCGGGACCCACGAGTACTTGGCGCCGGAGATAATTTCCGGCGAAGGCCACGGCAACGCCGTTGATTGGTGGACCCTCGGGGTGTTCATGTTTGAGTTGCTGTACGGGATCACACCCTTCAAGGGGCTCGATAATGAGCTAACCTTGGCTAACATAGTGGCTCGAGCCCTTGAGTTCCCAAAGGAGCCCATGGTGGCTGAACCACTCAAGGACTTGATTGCAAAACTATTGGTGAAGGACCCCACAAAACGGTTGGGGTCCACAATGGGGGCCACTGCCATAAAGCACCATCCCTATTTCAATGGGATCAATTGGGCATTGTTGAGGTGTGCGTCGCCGCCGTACAAGCCGCCGCCGCCGACGGTGTCTAAGGATTTAGTTCAACTCCATAATGGTACAACAACCACTCAAGTAGATTATTACTAA 1620 0.5228 MGPFLWALVSQKSSKWPILHLPAHISFSNFQKPPNSSSLLSSSLCFISTILHPSSATMQPLAAYTASTGAIQSSTDTLTGEFKNLSCESTATTNSSAEDIAGDFDDLNGNAASGTAIIEKKQSTSQSAKSYTQSSVSVSVSDSDPSRDAIDRFKSDGVGSNRATIGMEDIRFVRRVGSGDIGSVYVAEVKGWEEAEECVFAAKVMDKEELVSRKKEERARTEREILEMLDHPFLPTLYAAIDSSRWCCLLTEFCPGGDLHVLRQRQPLQRFHEDAVRFYASEVVIALEYLHMMGIIYRDLKPENVLIRSDGHIMLTDFDLSLKADDSSTSTAQIIFDHHLPPHTDQSSSAMSSCILPNCIVPAVPCFHPKRNRKKKRSSRCGSLEIVAEPIEIRSMSFVGTHEYLAPEIISGEGHGNAVDWWTLGVFMFELLYGITPFKGLDNELTLANIVARALEFPKEPMVAEPLKDLIAKLLVKDPTKRLGSTMGATAIKHHPYFNGINWALLRCASPPYKPPPPTVSKDLVQLHNGTTTTQVDYY 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2542 539 Coils Coil 204 224 - -
Sto8g2542 539 Gene3D Phosphorylase Kinase; domain 1 172 257 - -
Sto8g2542 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Sto8g2542 539 MobiDBLite consensus disorder prediction 122 144 - -
Sto8g2542 539 PANTHER PROTEIN KINASE G11A-LIKE 103 539 - -
Sto8g2542 539 SUPERFAMILY Protein kinase-like (PK-like) 164 527 IPR011009 -
Sto8g2542 539 ProSiteProfiles Protein kinase domain profile. 170 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto8g2542 539 Gene3D Transferase(Phosphotransferase) domain 1 258 516 - -
Sto8g2542 539 PANTHER FLIPPASE KINASE 1-RELATED 103 539 - -
Sto8g2542 539 MobiDBLite consensus disorder prediction 122 155 - -
Sto8g2542 539 Pfam Protein kinase domain 395 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto8g2542 539 Pfam Protein kinase domain 173 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto8g2542 539 SMART serkin_6 170 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2542 Sto-Chr8 17692331 17696470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2542 172 508 AGC Kinase Gene Family AT3G44610 67.797 1.28e-177 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Sto8g2542 Pkinase 3.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2542 K08286 - gmx:100786154 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2542 8 17692331 17696470 Sto13g3098 13 35375959 35380159 CCT
Sto8g1040 8 6555367 6558426 Sto8g2542 8 17692331 17696470 ECH
Sto8g2542 8 17692331 17696470 Sto8g2542 8 17692331 17696470 ECH