Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2496 atggtttttttattaatgatacATTATATTGTTTTGCAGGATGTTTCTGATGAGTTAGATctgaaaataaagaaatatcttAGAGGAGAAGGTGCAAATTTGGAGgctttgaaagataaaaaactgAAGGGTCAACTTTCTGTTAGAGAAGAATTATTTAGCAAATCCGCAAAAGTTGCTGCCAAGGCTGATAAGTACTATCTGCAAATTAAGTACCTCAAAATTAGCCTGTGGCTTGTGCCCAGTGAGGGAGGCTATCTAGAGGGTGAAGGCATAGAGAAGACATGGAGGATAAAACAGGAGGCAATATCTAAAGAAGTAGATATCTTAAGCTCAAGGAAgcaatttgatattattttaccAGAACTTGGTCCATACACTTTGGATTTTACTTCAAGTGGCCGATATATGGCTGTTGGAGGGCGCAAAGGCCATATTGGAATTGTGGACATGATGCAGTTGAGCATAATCAGAGAGTTTCAGGTAAGAGAAACAGTGCGTGATGTGGCATTCTTACATAATGAGATGTTTTTTGCAGCTGCCCAGAAAAAGTATCCTTACATCTATAACCGTGATGGAACAGAGCTTCACTGCCTTAAGGAACATGGTGCTGTGTTAAGACTTCAATTTCTAAAAAACCACTTTCTCTTGGCTTCAATAAACAAATTTGGGCAGCTTCATTATCAGGACGTTACAACAGGTTCCATGGCTGGTAATTATCGGACTGGCTTAGGTCGTACTAGTGTGATGCAAGTGAACCCCTTCAATGGGGTTATTGGTTTGGGTCATTCAGGTGGTACAGTTACAATGTGGAAGCCTACAAGCTCTGCTCCTCTTGTAAAGATGCTGTGTCATCATGGTCCTCTCTCAGCTTTGGCATTTCACTCAAATGGCAACTTAATGGCTACTGCTGGCAAAGACAAAAAGGTCAAGCTTTGGGACTTGAGGAAATTTGAGGTTCTCCAGACATTTCCAGGCCATGCAAACACCTTGGATTTTAGTCAGAAAGGCTTACTTGCTTGTGGTACTGGATCTTTTGTACAAGTTCTAGGCGATCTTTCTGGTTCCCATAATTATTCTAGGTATATGACTCATTCCATGGCTAAGGGTTATCAGATAGGAAAGTTAACTTTTCGACCGTATGAAGATGTTCTAGCCATAGGGCATTCCATGGGGTTTTCCAGTATTCTTATTCCGGGATCAGGCGAACCTAACTTCGATTCATGGGTGGCCAATCCATTTGAAACATCTAAACAAAGGAGAGAGAAGGAAGTTCGCTCCCTTCTTGATAAGCTGCCTCCGGAGACGATCATGTTGGATCCAAGCAAAATTGGTACAGTGAAACCGACAAAGAGAGAGAAGCCAACACAGAAGGAGAGGGAGACCGAGGTGGATGCTGCCATCGAAGCTGTCAAggacaagaaaatgaagaagaaaacaaaaggtAGAAATAAGCCAGGtaagatgatgaagaaaaagCAGGAAGCAATTGATAAAGTGAAGAGACCTTACTTGGAGCAAAAACTTAAGGAGGAAGAAGTATCCAGAAAGAAGCAGAAAATTAGTGAGGAAGTTACTTTACCAAAGTCTTTAGAGCGGTTTGCTAGAAAAGCAGCATCATGA 1623 0.3888 MVFLLMIHYIVLQDVSDELDLKIKKYLRGEGANLEALKDKKLKGQLSVREELFSKSAKVAAKADKYYLQIKYLKISLWLVPSEGGYLEGEGIEKTWRIKQEAISKEVDILSSRKQFDIILPELGPYTLDFTSSGRYMAVGGRKGHIGIVDMMQLSIIREFQVRETVRDVAFLHNEMFFAAAQKKYPYIYNRDGTELHCLKEHGAVLRLQFLKNHFLLASINKFGQLHYQDVTTGSMAGNYRTGLGRTSVMQVNPFNGVIGLGHSGGTVTMWKPTSSAPLVKMLCHHGPLSALAFHSNGNLMATAGKDKKVKLWDLRKFEVLQTFPGHANTLDFSQKGLLACGTGSFVQVLGDLSGSHNYSRYMTHSMAKGYQIGKLTFRPYEDVLAIGHSMGFSSILIPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLDPSKIGTVKPTKREKPTQKERETEVDAAIEAVKDKKMKKKTKGRNKPGKMMKKKQEAIDKVKRPYLEQKLKEEEVSRKKQKISEEVTLPKSLERFARKAAS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2496 540 Pfam BING4CT (NUC141) domain 362 440 IPR012952 -
Sto8g2496 540 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 282 316 - -
Sto8g2496 540 SMART WD40_4 275 314 IPR001680 GO:0005515
Sto8g2496 540 SMART WD40_4 317 351 IPR001680 GO:0005515
Sto8g2496 540 SMART WD40_4 111 150 IPR001680 GO:0005515
Sto8g2496 540 SMART WD40_4 153 190 IPR001680 GO:0005515
Sto8g2496 540 ProSitePatterns Trp-Asp (WD) repeats signature. 301 315 IPR019775 -
Sto8g2496 540 PANTHER WD-REPEAT PROTEIN BING4 13 537 IPR040315 -
Sto8g2496 540 PANTHER BNAANNG36350D PROTEIN 13 537 - -
Sto8g2496 540 MobiDBLite consensus disorder prediction 439 461 - -
Sto8g2496 540 MobiDBLite consensus disorder prediction 446 461 - -
Sto8g2496 540 Gene3D - 249 412 IPR015943 GO:0005515
Sto8g2496 540 MobiDBLite consensus disorder prediction 473 502 - -
Sto8g2496 540 Pfam WD domain, G-beta repeat 283 314 IPR001680 GO:0005515
Sto8g2496 540 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 323 IPR001680 GO:0005515
Sto8g2496 540 SUPERFAMILY WD40 repeat-like 114 390 IPR036322 GO:0005515
Sto8g2496 540 Gene3D - 96 248 IPR015943 GO:0005515
Sto8g2496 540 SMART BING4CT_2 361 441 IPR012952 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2496 124 337 U-box Gene Family AT1G04510 25.110 2.22e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2496 K14768 - gmx:100786818 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2496 8 17255839 17261350 Sto8g2496 8 17255839 17261350 ECH