Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2479 ATGTCATCATCAGCAGAGGAATTTGCTTGGTCTTCGATTGAAGAACAATCCACCAAAGCTCCAACCCCATTTGATGGAAGGAGTGGATATGATTCAAGAACAGGCATTTATCACTCCCTTGTTAAGCTCAGTGGTAAGAATTTGATTCCCACAAGGCCTGATCTTGACACTGCAAGTCTTGTTCTATCACACTTCCCTCATGCACACCAGGTTACTGATAAAAAGCCTGCCTTTATTGATGCTTCAACTAACCAAAGTATAAGCTATGGTGAACTTCGCAGCTCAGTTTATGCCCTTGCATCGGGTTTATTCCGTGGATTCGGGGTCCGAAAAGGCGATGTGGTCTTTGTTCTGTCTCCAAACTCAATCTTATACCCAACCATATGCCTGGCTGTGATATCAATAGGAGCAATTCTGACCACTGCAAATCCTCTCAACACAGAGTCAGAAATTGCTAAGCAAGTGAAGGATTCAGGTGCTAAACTAGCCATTTCGGTTCCTGAGGAGTTGGAGAAACTTACTCCAACTGGGATTCCTGTGATCCTCACCACTTGTTCATCTAATGGCCAAATGGTATCAGTTAAAGAGATAATAGAAGGCTGCTCTGATAATAACCCACAAGAGTTACCTAAAGTGAACTTGGCTCAATCAGATACTGCAGCTATACTGTATTCTTCAGGCACCACTGGTTTGAGCAAAGGAGTGGTTTTGACACATGCAAATCTCATATCCATCATGAAGTTAATGATGTGGTCCACAGAAGTATCTTCATCTCAAGATGATGTCTTCTTGGGATTCATCCCTATGTTTCACATCTATGGGCTGATGTTCTTTGCATTGGGATTGTTGTGTATGGGTGTTACATCAGTTATAATGCAGAAATTTGACTTCAAAACCATGCTTGAAGCAATTCAGAAGCATAGAGTCAATAACCTACCTGCAGTGCCTCCTGTGATTCTTGCTCTTGTGAAATATGGAAGCAAAGCCGGGTTCGACTTGTCGAGCCTAAGAAGGGTGGGTTCTGGTGCTGCACCTTTGAGCAAAGAACTATCTGATGAGTTCAGAAAGATGTTTCCTTGGGTTGAGCTAAGGCAAGGCTATGGACTAACAGAAAGCTGTGGTGGAGGAACATTTTTCGCATCAAATGAAGATGCTAAAGCTCGGCCCGGCTCGTGTGGGAGGCTACTCCCAACCTTCTGTGCAAAAGTTGTGGATGTTGAGACAGGGAAGCCTTTGGCTCCAAGAAAGGAAGGAGAATTATGGCTGAAAAGTCCTACAATCATGAAAGCTTATCTGGGGAACATGGAGGCAACAGCTGCAACACTTGATTCAGAAGGGTGGTTGAAAACTGGTGATCTTGCTTTTGTTGATGAGGATGGGTTTGTTTATGTGCTTGAACGAATAAAGGAGCTGATCAAGCATAATGGGTATCAGGTTGCTCCTGCAGAACTGGAATCTGTGCTGCTCAGTCATCCCAATATTGTTGATGCAGCTGTCATACCagtTGAAGATGAAGAAACAGGACAGATACCAATGGCATATATTGTGAGAGCAGCTGGGTCTGAGCTCACAGAAGACCAAGTCATTCAATTTGTAGCCAGCCAGGTTGCCCCATacaagaaaataaggagggtaAGTTTCATTGATGTCATTCCAAGGTCAGCTGCAGGCAAAATCTTGCGCAAGAATCTTGTTTCGTCCACCAAACATCTACTTCTTTCCAAGTTATGA 1731 0.4315 MSSSAEEFAWSSIEEQSTKAPTPFDGRSGYDSRTGIYHSLVKLSGKNLIPTRPDLDTASLVLSHFPHAHQVTDKKPAFIDASTNQSISYGELRSSVYALASGLFRGFGVRKGDVVFVLSPNSILYPTICLAVISIGAILTTANPLNTESEIAKQVKDSGAKLAISVPEELEKLTPTGIPVILTTCSSNGQMVSVKEIIEGCSDNNPQELPKVNLAQSDTAAILYSSGTTGLSKGVVLTHANLISIMKLMMWSTEVSSSQDDVFLGFIPMFHIYGLMFFALGLLCMGVTSVIMQKFDFKTMLEAIQKHRVNNLPAVPPVILALVKYGSKAGFDLSSLRRVGSGAAPLSKELSDEFRKMFPWVELRQGYGLTESCGGGTFFASNEDAKARPGSCGRLLPTFCAKVVDVETGKPLAPRKEGELWLKSPTIMKAYLGNMEATAATLDSEGWLKTGDLAFVDEDGFVYVLERIKELIKHNGYQVAPAELESVLLSHPNIVDAAVIPVEDEETGQIPMAYIVRAAGSELTEDQVIQFVASQVAPYKKIRRVSFIDVIPRSAAGKILRKNLVSSTKHLLLSKL 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2479 576 Gene3D - 50 469 IPR042099 -
Sto8g2479 576 ProSitePatterns Putative AMP-binding domain signature. 222 233 IPR020845 -
Sto8g2479 576 CDD 4CL 49 564 - -
Sto8g2479 576 Gene3D - 470 571 IPR045851 -
Sto8g2479 576 Pfam AMP-binding enzyme 69 473 IPR000873 -
Sto8g2479 576 Pfam AMP-binding enzyme C-terminal domain 483 558 IPR025110 -
Sto8g2479 576 SUPERFAMILY Acetyl-CoA synthetase-like 60 566 - -
Sto8g2479 576 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 22 575 - -
Sto8g2479 576 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 22 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2479 Sto-Chr8 17129412 17133483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2479 25 565 Monolignol Biosynthesis Gene Families AT1G20500 45.636 1.21e-161 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2479 K10526 - gmx:100783104 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto13g3194 13 35975356 35980251 Sto8g2479 8 17129412 17133483 ECH
Sto8g2479 8 17129412 17133483 Sto8g2479 8 17129412 17133483 ECH