Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2477 ATGGGTCGTCATTCTTCGGCTTCACTCTCTCCTGGCTTCCGATTCCACCCTACCGACGAAGAACTCGTTCGTTACTACCTCAGGCGCAAGGTCTCCGGCAAATCCTTCCGCTTCGATCCTATTGCGGTCATCGATATCTATAAGTCCGAACCATGGGATCTCCCCTGTAAGTCGAAGCTGAAAAGCAGGGACTTGGAATGGTATTTTTTCAGTGGGCTGGACAAGAAGTACGGTAATGGGTCTAAGACGAATCGGGCCACTGAGAAAGGGTACTGGAAGACTACGGGGAAGGATCGCCAAGTGCGACACAACTCCCGAATTGTTGGAATGAAGAAGACCCTGGTTTTTCATGTTGGCCGAGCCCCGCGTGGTACGCGGACCAATTGGGTCATGCATGAGTACAGACTGGAAGATGAAGAATTGGTGAAAGCAGGAATAGCTCAGAAGGATGCTTTTGTGCTCTGTAGGGTTTTTCAGAAGAGTGGTACAGGACCAAAGAATGGGGAGCAGTACGGTGCCCCATTTGTGGAGGAGGAATGggaagacgaagatgatgagGTGGCTCCATTGCCTGGTGAAGGGGCTGTGACTGATGAACTGCTATTTGGTAATGATATTGATGCTTTTCTTGAAACAGACGACCTTGAGCAGGCCCTTGATATGGGTGTAGCATCTGAGAGTACGGGTCTTCCAGTGAACTTCTGTCATGGGGAGAGTAGTAGCTATCCTGTGCATTCTCAGGAATTAACTGAAGATCAGAAGCCCTTGGTAAGCACTGTTGGGTCTTTTAAGCCTCAAGAAGACCAGTTCTTGAATACGCCTGAGCAGTGTGCAATGGACAGAGAAACAGTGAAAGATGAATACAATGGTGAACAAAGCGATGATGGAAATCCTCTAAATATCGATCATGTATTTGATGAGCTATACTTGGATGCTATTGATTATTCTCAGGTTGATGACGGCTCATTCCTGGAAACCAATGATCTTGCAATTCCCATTGCTGCTGATCCTGATGGTACCAACATGCTAGATGAGTATCTTACATACCTGGATGCTAACGATGATATTTTCAACTATATATCTTTTGATTCTCCTCCTCTGATTAAGGGCAGTGAAGATTCTGCTCCTGACCAAGTACCACCTTTTACCCAGCAGAATGTGGATGAAGAAACCAAGGTTTCTTACATGGAAAGCAAGCAGAATGTCGAAACACCTTATAATAGCATCGAAGCTTCCTCTTCGAAGCAGATTCCAGGAATATCTAAATCAGTATCTGGAAATACAAGTTCATTTATAAAGAAGGCCAATAACTTGCTGGGCAGCATCCCTGCTCCCCAGGCATTTGCTGCAGATTCTGCACCTAAAGACATTGCTCTTCGGCTTCATTCTGCTGCCCAATCTTCCTTTGCAGATCATATAACTACAGGTATGATTAGAGTTACTAACATTACTGTAAGAGGCGATGGCATCGACTGGACGCTGGGGAAGAATGGAGAGTTGAACTTCATGATCTCTTCTGACTTTTCTCAACTTGATGTTAATTCTGCTGCTTCAGTCCCGGTTTCCGGTTCATTTTCCGGCAAGACTGCATTTTTGGTGTCCCATTGCTGGGTTTTCGTAATGCTCTTTTCGGTTCTAATTCTTTCACTGAGTTGCAAGGGCGGGAGTTTCATGTATGCTGGTAAATGA 1689 0.4506 MGRHSSASLSPGFRFHPTDEELVRYYLRRKVSGKSFRFDPIAVIDIYKSEPWDLPCKSKLKSRDLEWYFFSGLDKKYGNGSKTNRATEKGYWKTTGKDRQVRHNSRIVGMKKTLVFHVGRAPRGTRTNWVMHEYRLEDEELVKAGIAQKDAFVLCRVFQKSGTGPKNGEQYGAPFVEEEWEDEDDEVAPLPGEGAVTDELLFGNDIDAFLETDDLEQALDMGVASESTGLPVNFCHGESSSYPVHSQELTEDQKPLVSTVGSFKPQEDQFLNTPEQCAMDRETVKDEYNGEQSDDGNPLNIDHVFDELYLDAIDYSQVDDGSFLETNDLAIPIAADPDGTNMLDEYLTYLDANDDIFNYISFDSPPLIKGSEDSAPDQVPPFTQQNVDEETKVSYMESKQNVETPYNSIEASSSKQIPGISKSVSGNTSSFIKKANNLLGSIPAPQAFAADSAPKDIALRLHSAAQSSFADHITTGMIRVTNITVRGDGIDWTLGKNGELNFMISSDFSQLDVNSAASVPVSGSFSGKTAFLVSHCWVFVMLFSVLILSLSCKGGSFMYAGK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2477 562 ProSiteProfiles NAC domain profile. 9 160 IPR003441 GO:0003677|GO:0006355
Sto8g2477 562 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 4 558 - -
Sto8g2477 562 SUPERFAMILY NAC domain 7 160 IPR036093 GO:0003677|GO:0006355
Sto8g2477 562 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 558 - -
Sto8g2477 562 Pfam No apical meristem (NAM) protein 11 136 IPR003441 GO:0003677|GO:0006355
Sto8g2477 562 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2477 Sto-Chr8 17111692 17115225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2477 1 550 NAC Transcription Factor Family AT5G04410 46.284 1.89e-145 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto8g2477 NAM 7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2477 - - qsu:111992092 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2477 8 17111692 17115225 Sto8g2477 8 17111692 17115225 ECH