Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2462 ATGGCTGGGAAGGAAGATAACCGAATATTTGTTGGAGGCTTGGCTTGGGACGTAACGGAGCGTCAGCTCGAGCATGCCTTTGGTCGTTACGGCAAGGTTACTGAATGCCAGATCATGTTGGAAAGAGACACAGGCCGTCCACGTGGATTTGGATTTATCACATTTTCAGATCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAGCTCTGTGATCGCATCATCTCTGTCAATAGGGCCCAGCCCAAGATGGGGGCAGATGATGTAGACCATGGTTACAGGGGTGGCTTCTCATCAGGTGGTAGGGAAAGCTATAGGGGAAGCTATGGAGGAGGAGACAGGGTAGGACAGGATGACTGCTTCAAATGTGGACGTCCTGGCCACTGGGCCCGAGATTGTCCTTTGGCAGGTGGCGGTCGTGGTGGGGGTGGTGGCTCATTTTCTTCACGTACTAGGTTTGGAGGTGGTGGGGGCCATGGGGATCGCTTTAGTGGTGAACGTGACCGACTTTTTGATGATCGTTATGATGGAGGGCGTTATGGGGAAAGGGAACGTTTGGATAGCCGGGATAACAAATATGCCAGCCGTGATCGCTATGCTAGTGACAGGTATTCAAGTTTTATGCTTTTTCATTACAGAAATCGATATGGTGGTTCAGATCGTTACCCACAAAATGGCTATGGCAAAGATAAAGGCTTTGACAAATATGGCAGTGCAAGAGGTAATGATAGGTATGGAAGTGGCATCGGGGCACGAGATGAAGGAAGAAGTTATAGGAGTAGGCCTGGTCCTTATGACCGGCCAACCAGGGGCGGTCGCCCGTCGTCATTTGACCGCTACTGA 852 0.5082 MAGKEDNRIFVGGLAWDVTERQLEHAFGRYGKVTECQIMLERDTGRPRGFGFITFSDRRGMEDAIKEMHGRELCDRIISVNRAQPKMGADDVDHGYRGGFSSGGRESYRGSYGGGDRVGQDDCFKCGRPGHWARDCPLAGGGRGGGGGSFSSRTRFGGGGGHGDRFSGERDRLFDDRYDGGRYGERERLDSRDNKYASRDRYASDRYSSFMLFHYRNRYGGSDRYPQNGYGKDKGFDKYGSARGNDRYGSGIGARDEGRSYRSRPGPYDRPTRGGRPSSFDRY 283
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2462 283 Gene3D - 119 145 - -
Sto8g2462 283 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Sto8g2462 283 MobiDBLite consensus disorder prediction 222 283 - -
Sto8g2462 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Sto8g2462 283 MobiDBLite consensus disorder prediction 250 266 - -
Sto8g2462 283 SMART rrm1_1 8 81 IPR000504 GO:0003723
Sto8g2462 283 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE 1 246 - -
Sto8g2462 283 SUPERFAMILY Retrovirus zinc finger-like domains 104 142 IPR036875 GO:0003676|GO:0008270
Sto8g2462 283 SUPERFAMILY RNA-binding domain, RBD 4 115 IPR035979 GO:0003676
Sto8g2462 283 PANTHER TRANSFORMER-2-RELATED 1 246 - -
Sto8g2462 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Sto8g2462 283 Pfam Zinc knuckle 123 137 IPR001878 GO:0003676|GO:0008270
Sto8g2462 283 Gene3D - 1 118 IPR012677 -
Sto8g2462 283 MobiDBLite consensus disorder prediction 142 171 - -
Sto8g2462 283 ProSiteProfiles Zinc finger CCHC-type profile. 123 137 IPR001878 GO:0003676|GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sto8g2462 Sto-Chr8 16924054 16929237 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2462 9 88 C2H2 Transcription Factor Family AT2G19380 41.250 1.70e-14 71.6