Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto8g2462 | ATGGCTGGGAAGGAAGATAACCGAATATTTGTTGGAGGCTTGGCTTGGGACGTAACGGAGCGTCAGCTCGAGCATGCCTTTGGTCGTTACGGCAAGGTTACTGAATGCCAGATCATGTTGGAAAGAGACACAGGCCGTCCACGTGGATTTGGATTTATCACATTTTCAGATCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAGCTCTGTGATCGCATCATCTCTGTCAATAGGGCCCAGCCCAAGATGGGGGCAGATGATGTAGACCATGGTTACAGGGGTGGCTTCTCATCAGGTGGTAGGGAAAGCTATAGGGGAAGCTATGGAGGAGGAGACAGGGTAGGACAGGATGACTGCTTCAAATGTGGACGTCCTGGCCACTGGGCCCGAGATTGTCCTTTGGCAGGTGGCGGTCGTGGTGGGGGTGGTGGCTCATTTTCTTCACGTACTAGGTTTGGAGGTGGTGGGGGCCATGGGGATCGCTTTAGTGGTGAACGTGACCGACTTTTTGATGATCGTTATGATGGAGGGCGTTATGGGGAAAGGGAACGTTTGGATAGCCGGGATAACAAATATGCCAGCCGTGATCGCTATGCTAGTGACAGGTATTCAAGTTTTATGCTTTTTCATTACAGAAATCGATATGGTGGTTCAGATCGTTACCCACAAAATGGCTATGGCAAAGATAAAGGCTTTGACAAATATGGCAGTGCAAGAGGTAATGATAGGTATGGAAGTGGCATCGGGGCACGAGATGAAGGAAGAAGTTATAGGAGTAGGCCTGGTCCTTATGACCGGCCAACCAGGGGCGGTCGCCCGTCGTCATTTGACCGCTACTGA | 852 | 0.5082 | MAGKEDNRIFVGGLAWDVTERQLEHAFGRYGKVTECQIMLERDTGRPRGFGFITFSDRRGMEDAIKEMHGRELCDRIISVNRAQPKMGADDVDHGYRGGFSSGGRESYRGSYGGGDRVGQDDCFKCGRPGHWARDCPLAGGGRGGGGGSFSSRTRFGGGGGHGDRFSGERDRLFDDRYDGGRYGERERLDSRDNKYASRDRYASDRYSSFMLFHYRNRYGGSDRYPQNGYGKDKGFDKYGSARGNDRYGSGIGARDEGRSYRSRPGPYDRPTRGGRPSSFDRY | 283 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto8g2462 | 283 | Gene3D | - | 119 | 145 | - | - | |
Sto8g2462 | 283 | SMART | c2hcfinal6 | 122 | 138 | IPR001878 | GO:0003676|GO:0008270 | |
Sto8g2462 | 283 | MobiDBLite | consensus disorder prediction | 222 | 283 | - | - | |
Sto8g2462 | 283 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 78 | IPR000504 | GO:0003723 | |
Sto8g2462 | 283 | MobiDBLite | consensus disorder prediction | 250 | 266 | - | - | |
Sto8g2462 | 283 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
Sto8g2462 | 283 | PANTHER | GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE | 1 | 246 | - | - | |
Sto8g2462 | 283 | SUPERFAMILY | Retrovirus zinc finger-like domains | 104 | 142 | IPR036875 | GO:0003676|GO:0008270 | |
Sto8g2462 | 283 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 115 | IPR035979 | GO:0003676 | |
Sto8g2462 | 283 | PANTHER | TRANSFORMER-2-RELATED | 1 | 246 | - | - | |
Sto8g2462 | 283 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
Sto8g2462 | 283 | Pfam | Zinc knuckle | 123 | 137 | IPR001878 | GO:0003676|GO:0008270 | |
Sto8g2462 | 283 | Gene3D | - | 1 | 118 | IPR012677 | - | |
Sto8g2462 | 283 | MobiDBLite | consensus disorder prediction | 142 | 171 | - | - | |
Sto8g2462 | 283 | ProSiteProfiles | Zinc finger CCHC-type profile. | 123 | 137 | IPR001878 | GO:0003676|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto8g2462 | Sto-Chr8 | 16924054 | 16929237 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto8g2462 | 9 | 88 | C2H2 Transcription Factor Family | AT2G19380 | 41.250 | 1.70e-14 | 71.6 |