Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2425 CTGTGCAATGGCGGCGGGGGCGGTAATGGCGATCCGTTGAATTGGGGAATGGCGGCGGAGGCGATGAAGGGAAGCCATTTGGAGGAGGTGAAGCGGATGGTGGAGGAGTACCGGAAGCCGGTGGTGCGAATTGCCGGCAACAGCCTCACGGTGTCGCAGGTGGCGGCGATTGCGAATCATGACTCCGGCGTGGCGGTGGAGCTGTCGGAGGAGGCTCGCGCCGCCGTGAAGGCCAGCAGCGATTGGGTCATGGAGAGTATGAATAAAGGGACTGACAGTTATGGAGTCACCACCGGCTTCGGTGCCACCTCACACCGGAGAACCAAGCAAGGTGGGGCCCTCCAGAGAGAGCTCAtaagATTTTTAAATGCTGGAATATTTGGTAATGGTACAAGTGAGTCCTCCCAAACCTTGCCTCACACAGCCACAAGAGCGGCCATGCTAGTTCGAATCAACACTCTTCTTCAAGGATACTCAGGAATCAGATTCGAGATCCTGGAAGCCATAACCAAGTTTCTGAACCACAACATTACCCCATGCTTACCACTCAGGGGCACCATTACTGCATCAGGAGACCTAGTCCCTCTATCCTACGTTGCAGGTCTTTTAATAGGTAGACCCAATTCCAAATCCATAGGTCCCAATGGCAAAGTCCTATCTGCTAAAGAAGCCTTCGAACAAGCTGGGATTCATGGTGGCTTCTTCGAATTGCAACCCAAAGAGGGCCTGGCTCTTGTAAATGGTACAGCAGTAGGGTCTGGTTTAGCCTCCATGGTTCTGTTTGAGGCTAACATTTTGAGTGTTCTCTCTGAGGTTTTGTCTGCTATATTTGCTGAGGTTATGCAGGGGAAACCAGAGTTCACTGACCATTTGACACATAAATTGAAGCACCACCCTGGACAGATTGAAGCTGCAGCTATAATGGAACACATTCTTAATGGGAGTTCTTATGTGAAAGCAGCACAGAAAGTTCATGAGATGGATCCTCTTCAGAAGCCTAAACAGGATAGGTATGCTTTGAGAACTTCTCCTCAATGGCTTGGTCCTCAGATTGAAGTCATAAGGCAAGCAACGAAGATGATTGAGAGGGAGATCAACTCTGTGAATGACAATCCATTGATTGATGTTTCAAGGAATAAGGCTCTTCATGGAGGGAACTTCCAAGGTACTCCTATTGGTGTTTCCATGGACAACACTCGCTTGGCTCTTGCTTCTATTGGTAAGCTCATGTTTGCTCAATTCTCCGAGCTCGTGAATGACTTTTACAACAACGGATTGCCTTCGAATCTCTCCGGCGGCCGGAACCCGAGCTTGGATTACGGCTTCAAAGGAGCCGAAATCGCCATGGCTTCCTACTGCTCAGAGCTCCAATTCCTAGCCAATCCTGTGACAAACCATGTGCAAAGTGCAGAGCAACACAATCAAGATGTGAACTCATTAGGACTCATTTCCTCAAGAAAAACATCTGAAGCTGTGGAGATTCTGAAGCTCATGTCCTCCACTTTTCTTGTTGCATTATGCCAAGCCATTGATTTGAGACACTTGGAAGAAAACCTCAAGAGCACAGTGAAGAACACTGTGAGCCAAGTGGCCAAAAGGGTCCTAACCATGGGTGTTAATGGTGAATTACATCCTTCAAGATTCTGTGAGAAGGACTTGCTCAAAGTGGTGGATCGCGAGCATGTGTTTGCCTACATTGATGATCCTTGCAGTGTGACATACCCTTTAATGCAGAAGCTGAGACAAGTTCTGGTTGATCATGCATTGGAGAATGGTCATGAGAGGGAGAAGTCGTCAAGCACCTCCATTTTCATGAAGATTGGAGCTTTGGAGGAAGAACTCAAAACCCTTTTGCCCAAAGAAATAGAAAGCGCGAGGATTGAGGTTGAGAATGGGAGTGCTGCGATTCCTAACAGGATCAAGGAATGCAGGTCTTACCCATTGTACAGATTTGTGAGAGAAGAAGTGGGGACTGATTTCCTAACGGGCGAGAAAGTGAGATCACCTGGTGAAGAATTTGATAAGGTTTTCTCTGCAATGTGTCAATGGAAGATGATTGATCCTTTGTTGGAGTGTCTCAAGGAATGGAATGGTGCCCCTTTACCATTGTGTTAG 2115 0.478 LCNGGGGGNGDPLNWGMAAEAMKGSHLEEVKRMVEEYRKPVVRIAGNSLTVSQVAAIANHDSGVAVELSEEARAAVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQRELIRFLNAGIFGNGTSESSQTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGKVLSAKEAFEQAGIHGGFFELQPKEGLALVNGTAVGSGLASMVLFEANILSVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILNGSSYVKAAQKVHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRQATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKRVLTMGVNGELHPSRFCEKDLLKVVDREHVFAYIDDPCSVTYPLMQKLRQVLVDHALENGHEREKSSSTSIFMKIGALEEELKTLLPKEIESARIEVENGSAAIPNRIKECRSYPLYRFVREEVGTDFLTGEKVRSPGEEFDKVFSAMCQWKMIDPLLECLKEWNGAPLPLC 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2425 704 Gene3D - 516 638 IPR023144 -
Sto8g2425 704 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 8 704 - -
Sto8g2425 704 CDD PAL-HAL 47 513 IPR001106 -
Sto8g2425 704 SUPERFAMILY L-aspartase-like 11 704 IPR008948 GO:0003824
Sto8g2425 704 Pfam Aromatic amino acid lyase 49 525 IPR001106 -
Sto8g2425 704 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 11 694 IPR005922 GO:0005737|GO:0006559|GO:0016841
Sto8g2425 704 Gene3D Fumarase/aspartase (Central domain) 250 699 - -
Sto8g2425 704 PANTHER HISTIDINE AMMONIA-LYASE 8 704 IPR001106 -
Sto8g2425 704 Gene3D - 5 249 IPR024083 -
Sto8g2425 704 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 185 201 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2425 Sto-Chr8 16582051 16586026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2425 1 704 Monolignol Biosynthesis Gene Families AT3G53260 81.601 0.0 1225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2425 K10775 - pvy:116115436 1232.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g0908 8 5722622 5725448 Sto8g2425 8 16582051 16586026 ECH
Sto13g3220 13 36150431 36153356 Sto8g2425 8 16582051 16586026 ECH
Sto8g2425 8 16582051 16586026 Sto8g2425 8 16582051 16586026 ECH